Am 27.12.2013 19:31, schrieb David Addy:

However, we need to know whether  anyone knows how to persuade QGIS/GDAL to
locate these tiles in the correct place please?


Have you tried working with virtual rasters? You can either build one for every tif file, or an index VRT file for all you have, or even an index on the virtual rasters from the first step.

You can run gdalwarp on the virtual raster without changing the original file.

HTH,
André Joost


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