Thanks Mike,

I guess that's reassuring - it would be weird if QGIS users just accepted that 
they'd need to re-add their layers every time.

But it doesn't help me ;) I have completed that particular project, by loading 
all the external maps, creating and saving the derivatives in the local 
directory, and then removing the external maps, in a single session. All the 
maps in the local directory remain accessible between sessions, so  for now I'm 
set.

Best,

Tyler

-- 
plantarum.ca

On Fri, Feb 7, 2020, at 6:46 AM, Mike Flannigan wrote:
> 
> I can't reproduce that on Linux Mint 19.2 and QGIS 3.10.1.
> Everything works fine when I include a shape file and a
> geotiff from another drive:
> /media/mike/main1/DDrive/GIS/Shape Files/MO
> 
> I reopen the project and it opens fine every time.
> 
> 
> Mike
> 
> 
> 
> On 2/5/20 2:00 PM, qgis-user-requ...@lists.osgeo.org wrote:
> > Date: Tue, 04 Feb 2020 17:02:09 -0500
> > From: "Tyler Smith"<ty...@plantarum.ca>
> > To:qgis-user@lists.osgeo.org
> > Subject: [Qgis-user] rasters on different hard drive become
> >     unavailable, paths not saved properly?
> > Message-ID:<418d7732-a785-4cb3-9fa2-6beb9cb18...@www.fastmail.com>
> > Content-Type: text/plain
> >
> > Hello,
> >
> > I'm just getting (re)started with QGIS (version 3.10.2, on Ubuntu 18.04). I 
> > have some big raster files that I will be using for several projects. I 
> > have a second 2TB hard drive on my computer where I store them. I put 
> > symbolic links to them in the folder for a QGIS project. This worked fine - 
> > I was able to add them to the project, complete some analyses (merge, 
> > ruggedness, align etc), and save the resulting rasters.
> >
> > However, when I re-opened the project, all the symbolic linked rasters 
> > appeared as unavailable layers. It looks like the paths to the symbolic 
> > links were replaced by relative paths to the linked files themselves (e.g., 
> > ../../../enm/worldclim/na/wcna_01.tif). This path is not correct, the 
> > actual file is at /media/data/enm/worldclim/na/wcna_01.tif, and the 
> > symbolic link is at ./data/wcna_01.tif, relative to the QGIS .qgz project 
> > file.
> >
> > I thought that the problem was using symbolic links, so I added one of the 
> > rasters using the full path to the file on the second hard drive. When I 
> > saved the project, closed and re-opened it, this layer was also listed as 
> > unavailable, with the same path listed for the corresponding symbolic 
> > linked file.
> >
> > Then I discovered that projects can be set to use absolute or relative 
> > paths. This project had been set to relative (the default). So I changed it 
> > to absolute, and corrected the datasource for one of my unavailable layers. 
> > That worked for the session, but after saving and reloading, the path had 
> > been stored as /home/tws/enm/worldclim/na/wcna_01.tif, which is an absolute 
> > path, but not the correct one (see above).
> >
> > The rasters and shapefiles that I created as part of this project, saved in 
> > the same directory as the .qgz file, work fine, and are available between 
> > QGIS sessions.
> >
> > Is it not possible to have files on different physical hard drives in the 
> > same project? Have I done something wrong here?
> >
> > Best,
> >
> > Tyler
> 
>
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