Update:

Got all services to run, including qubes-gui-agent.  Turns out the dependency 
it was failing on was meminfo-writer which was enabled in the 
/usr/lib/qubes/init/qubes-sysinit.sh script, but promptly disabled because it 
wasn't "checkmarked" in dom0's VM settings page.

That said, with all services running, still same behavior of getting no replies 
to "qvm-run --pass-io" nor does any qvm-run for executing commands, e.g., touch.

  qubes-db.service        
  qubes-early-vm-config.service 
  qubes-meminfo-writer.service  
  qubes-mount-dirs.service    
  qubes-qrexec-agent.service 
  qubes-sysinit.service 

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