Yep. When I first installed the apps on the template and afterwards shut it off 
I saw the apps in the AppVM.

The issue happened when I've restored. And, again, I did not reinstall the apps 
in the template, they were already there. The dnf install command resulted in 
no change but it somehow "reminded" Qubes they exist and so I could use the 
again as UI/windows.

Regards

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