Hello list Thank you for your help with the d-p-q-r-tests on Irix.
After patching d-p-q-r-tests.R, and d-p-q-r-tests.Rout.save file to reflect the change, d-p-q-r tests succeed but make check still fails: > comparing 'complex.Rout' to './complex.Rout.save' ...188c188 > < [1] 0+0i > --- > > [1] 1.6789e-308+0i > OK > running code in 'print-tests.R' ... OK > comparing 'print-tests.Rout' to './print-tests.Rout.save' ...256c256 > < [1] 9 > --- > > [1] 11 > 260c260 > < [1] 0.000000e+00 2.225074e-308 2.225074e-308 2.227299e-308 > 2.447581e-308 > --- > > [1] 2.002566e-308 2.222849e-308 2.225074e-308 2.225074e-308 > 2.225074e-308 2.227299e-308 2.447581e-308 > 266c266 > < [1] 0.000000e+00 0.000000e+00 0.000000e+00 2.447581e-308 > 1.566452e-306 1.253162e-305 > --- > > [1] 2.002566e-308 2.447581e-308 1.281643e-306 1.566452e-306 > 1.025314e-305 1.253162e-305 > 269,273c269,273 > < [1,] 0e+00 0e+00 0.0e+00 0.00e+00 0.000e+00 0.0000e+00 > 0.00000e+00 > < [2,] 0e+00 0e+00 0.0e+00 0.00e+00 0.000e+00 0.0000e+00 > 0.00000e+00 > < [3,] 0e+00 0e+00 0.0e+00 0.00e+00 0.000e+00 0.0000e+00 > 0.00000e+00 > < [4,] 0e+00 0e+00 2.4e-308 2.45e-308 2.448e-308 2.4476e-308 > 2.44758e-308 > < [5,] 2e-306 2e-306 1.6e-306 1.57e-306 1.566e-306 1.5665e-306 > 1.56645e-306 > --- > > [1,] 2e-308 2e-308 2.0e-308 2.00e-308 2.003e-308 2.0026e-308 > 2.00257e-308 > > [2,] 2e-308 2e-308 2.4e-308 2.45e-308 2.448e-308 2.4476e-308 > 2.44758e-308 > > [3,] 1e-306 1e-306 1.3e-306 1.28e-306 1.282e-306 1.2816e-306 > 1.28164e-306 > > [4,] 2e-306 2e-306 1.6e-306 1.57e-306 1.566e-306 1.5665e-306 > 1.56645e-306 > > [5,] 1e-305 1e-305 1.0e-305 1.03e-305 1.025e-305 1.0253e-305 > 1.02531e-305 > 355c355 > < 4.141593+ 1i 4.341593+ 10i NaN+NaNi Inf+ 0i -Inf > +NaNi NaN+Infi > --- > > 4.141593+ 1i 4.341593+ 10i NA Inf+ 0i -Inf > +NaNi NaN+Infi > 358c358 > < [1,] 4.141593+ 1i NaN+NaNi -Inf+NaNi > --- > > [1,] 4.141593+ 1i NA -Inf+NaNi > 364c364 > < [3,] NaN+ NaNi NaN+ Infi > --- > > [3,] NA NaN+ Infi > OK > running code in 'datasets.R' ... OK > comparing 'datasets.Rout' to './datasets.Rout.save' ... OK > running code in 'lapack.R' ... OK > comparing 'lapack.Rout' to './lapack.Rout.save' ... OK > gmake[3]: Leaving directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/tests' > gmake[2]: Leaving directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/tests' > gmake[2]: Entering directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/tests' > running regression tests > gmake[3]: Entering directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/tests' > running code in 'reg-tests-1.R' ...gmake[3]: *** [reg-tests-1.Rout] > Error 1 > gmake[3]: Leaving directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/tests' > gmake[2]: *** [test-Reg] Error 2 > gmake[2]: Leaving directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/tests' > gmake[1]: *** [test-all-basics] Error 1 > gmake[1]: Leaving directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/tests' > gmake: *** [check] Error 2 > Also since we are using perl 5.6 on the system; the documentation system did not build. > [EMAIL PROTECTED]:104# perl -v > This is perl, v5.6.1 built for irix-n32 configure output: > checking for perl... /usr/sbin/perl > checking whether perl version is at least 5.8.0... Perl v5.8.0 > required--this is only v5.6.1, stopped at -e line 1. > no > configure: WARNING: you cannot build the object documentation system The following errors occurred during gmake check: > gmake[5]: Entering directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > you need Perl version 5 to build the R object docs > gmake[5]: *** [Rdfiles] Error 1 > gmake[5]: Leaving directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > file ../../library/base/R-ex cannot be opened at ../../share/perl/ > massage-Examples.pl line 129. > running code in 'base-Ex.R' ... OK > collecting examples for package 'tools' ... > gmake[5]: Entering directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > you need Perl version 5 to build the R object docs > gmake[5]: *** [Rdfiles] Error 1 > gmake[5]: Leaving directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > file ../../library/tools/R-ex cannot be opened at ../../share/perl/ > massage-Examples.pl line 129. > running code in 'tools-Ex.R' ... OK > collecting examples for package 'utils' ... > gmake[5]: Entering directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > you need Perl version 5 to build the R object docs > gmake[5]: *** [Rdfiles] Error 1 > gmake[5]: Leaving directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > file ../../library/utils/R-ex cannot be opened at ../../share/perl/ > massage-Examples.pl line 129. > running code in 'utils-Ex.R' ... OK > collecting examples for package 'grDevices' ... > gmake[5]: Entering directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > you need Perl version 5 to build the R object docs > gmake[5]: *** [Rdfiles] Error 1 > gmake[5]: Leaving directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > file ../../library/grDevices/R-ex cannot be opened at ../../share/ > perl/massage-Examples.pl line 129. > running code in 'grDevices-Ex.R' ... OK > collecting examples for package 'graphics' ... > gmake[5]: Entering directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > you need Perl version 5 to build the R object docs > gmake[5]: *** [Rdfiles] Error 1 > gmake[5]: Leaving directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > file ../../library/graphics/R-ex cannot be opened at ../../share/ > perl/massage-Examples.pl line 129. > running code in 'graphics-Ex.R' ... OK > collecting examples for package 'stats' ... > gmake[5]: Entering directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > you need Perl version 5 to build the R object docs > gmake[5]: *** [Rdfiles] Error 1 > gmake[5]: Leaving directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > file ../../library/stats/R-ex cannot be opened at ../../share/perl/ > massage-Examples.pl line 129. > running code in 'stats-Ex.R' ... OK > collecting examples for package 'datasets' ... > gmake[5]: Entering directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > you need Perl version 5 to build the R object docs > gmake[5]: *** [Rdfiles] Error 1 > gmake[5]: Leaving directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > file ../../library/datasets/R-ex cannot be opened at ../../share/ > perl/massage-Examples.pl line 129. > running code in 'datasets-Ex.R' ... OK > collecting examples for package 'methods' ... > gmake[5]: Entering directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > you need Perl version 5 to build the R object docs > gmake[5]: *** [Rdfiles] Error 1 > gmake[5]: Leaving directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > file ../../library/methods/R-ex cannot be opened at ../../share/perl/ > massage-Examples.pl line 129. > running code in 'methods-Ex.R' ... OK > collecting examples for package 'grid' ... > gmake[5]: Entering directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > you need Perl version 5 to build the R object docs > gmake[5]: *** [Rdfiles] Error 1 > gmake[5]: Leaving directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > file ../../library/grid/R-ex cannot be opened at ../../share/perl/ > massage-Examples.pl line 129. > running code in 'grid-Ex.R' ... OK > collecting examples for package 'splines' ... > gmake[5]: Entering directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > you need Perl version 5 to build the R object docs > gmake[5]: *** [Rdfiles] Error 1 > gmake[5]: Leaving directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > file ../../library/splines/R-ex cannot be opened at ../../share/perl/ > massage-Examples.pl line 129. > running code in 'splines-Ex.R' ... OK > collecting examples for package 'stats4' ... > gmake[5]: Entering directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > you need Perl version 5 to build the R object docs > gmake[5]: *** [Rdfiles] Error 1 > gmake[5]: Leaving directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > file ../../library/stats4/R-ex cannot be opened at ../../share/perl/ > massage-Examples.pl line 129. > running code in 'stats4-Ex.R' ... OK > collecting examples for package 'tcltk' ... > gmake[5]: Entering directory `/usr/global/R-build/R-2.6.0- > patched-11-08-07/src/library' > you need Perl version 5 to build the R object docs > gmake[5]: *** [Rdfiles] Error 1 I figure these errors are just the inability to create documentation, but mention them in case they may be relevant or important. Thanks, Kamil Kamil Marcinkowski Westgrid System Administrator [EMAIL PROTECTED] University of Alberta site Tel.780 492-0354 Research Computing Support Fax.780 492-1729 Academic ICT Edmonton, Alberta, CANADA University of Alberta "This communication is intended for the use of the recip...{{dropped:17}} ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel