Sorry, I forgot the sessionInfos:

devel:
R version 2.12.0 beta (2010-10-03 r53154)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

2.11:
R version 2.11.1 (2010-05-31)
x86_64-pc-linux-gnu

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base


Claudia Beleites wrote:
Dear all,

I have trouble with R-beta sweaving files that include definitions with
\SweaveInput in combination with keep.source = TRUE

Symptom:
SInput is taken from too far down the input file (the shift is the number of lines of the included file). Is that known? Searching didn't turn up anything, yet I think there are more people than just me using keep.source.

Example:
$ ~/tmp/R-beta/bin/R CMD Sweave baseline.Rnw &&
mv baseline.tex baseline.devel.tex &&
R CMD Sweave baseline.Rnw &&
mv baseline.tex baseline.2.11.tex &&
diff -u baseline.2.11.tex baseline.devel.tex

gives:
--- baseline.2.11.tex    2010-10-05 11:33:49.000000000 +0200
+++ baseline.devel.tex    2010-10-05 11:33:49.000000000 +0200
@@ -83,7 +83,7 @@
 \verb+\SweaveOpts{keep.source = TRUE}+
 \begin{Schunk}
 \begin{Sinput}
-> 12
+> line 54
 \end{Sinput}
 \begin{Soutput}
 [1] 12
@@ -106,7 +106,7 @@
 line 63 chunk option keep.source = TRUE
 \begin{Schunk}
 \begin{Sinput}
-> 14
+> line 67
 \end{Sinput}
 \begin{Soutput}
 [1] 14

I used yesterday's R-beta, and my system is Ubuntu 9.10 64 bit (though that probably doesn't matter).

Building the example file I also found that \SweaveInput{} cannot be followed by anything else on the line(not even a LaTeX comment).

\SweaveInput{x}y
complains that file xy is not found.

Best regards,

Claudia Beleites


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--
Claudia Beleites
Dipartimento dei Materiali e delle Risorse Naturali
Università degli Studi di Trieste
Via Alfonso Valerio 6/a
I-34127 Trieste

phone: +39 0 40 5 58-37 68
email: cbelei...@units.it

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