You may want to retry that after a make distclean, in case anything changed in the toolchain.
-pd > On 6 Apr 2017, at 14:43 , Therneau, Terry M., Ph.D. <thern...@mayo.edu> wrote: > > This run was done this AM on my linux box, and older 32 bit Dell optiplex > (core 2 duo). The failure message is at the very end. (It's due to be > replaced in a couple of weeks.) The sequence of steps was > > svn up > tools/rsync-recommended > ./configure > make > make check-all |& tee zzz > > > Terry T. > > > Result of ./config > R is now configured for i686-pc-linux-gnu > > Source directory: . > Installation directory: /usr/local > > C compiler: gcc -g -O2 > Fortran 77 compiler: f95 -g -O2 > > Default C++ compiler: g++ > C++98 compiler: g++ > C++11 compiler: g++ -std=gnu++11 > C++14 compiler: g++ -std=gnu++14 > C++17 compiler: > Fortran 90/95 compiler: gfortran -g -O2 > Obj-C compiler: > > Interfaces supported: X11, tcltk > External libraries: readline, curl > Additional capabilities: PNG, JPEG, NLS, cairo, ICU > Options enabled: shared BLAS, R profiling > > Capabilities skipped: TIFF > Options not enabled: memory profiling > > Recommended packages: yes > > ---- > sessionInfo() after invoking R --vanilla > > R Under development (unstable) (2017-04-06 r72489) > Platform: i686-pc-linux-gnu (32-bit) > Running under: Ubuntu 16.04.2 LTS > > Matrix products: default > BLAS: /usr/local/src/R-devel/lib/libRblas.so > LAPACK: /usr/local/src/R-devel/lib/libRlapack.so > > locale: > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C > [3] LC_TIME=en_US.UTF-8 LC_COLLATE=C > [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 > [7] LC_PAPER=en_US.UTF-8 LC_NAME=C > [9] LC_ADDRESS=C LC_TELEPHONE=C > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > loaded via a namespace (and not attached): > [1] compiler_3.5.0 > > ---------------------- > The results of "make" showed nothing remarkable. > > Here is make test-all > > make[1]: Entering directory '/usr/local/src/R-devel/tests' > make[2]: Entering directory '/usr/local/src/R-devel/tests' > make[3]: Entering directory '/usr/local/src/R-devel/tests/Examples' > Testing examples for package ‘base’ > comparing ‘base-Ex.Rout’ to ‘base-Ex.Rout.prev’ ... NOTE > 1573,1607c1573,1608 > < [35] "MANDATORY_PATH" "MFLAGS" > < [37] "PAGER" "PATH" > < [39] "PWD" "QT4_IM_MODULE" > < [41] "QT_ACCESSIBILITY" "QT_IM_MODULE" > < [43] "QT_LINUX_ACCESSIBILITY_ALWAYS_ON" "R_ARCH" > < [45] "R_BROWSER" "R_BZIPCMD" > < [47] "R_CMD" "R_DOC_DIR" > < [49] "R_ENVIRON" "R_ENVIRON_USER" > < [51] "R_GZIPCMD" "R_HOME" > < [53] "R_INCLUDE_DIR" "R_LIBS" > < [55] "R_LIBS_SITE" "R_LIBS_USER" > < [57] "R_OSTYPE" "R_PAPERSIZE" > < [59] "R_PAPERSIZE_USER" "R_PDFVIEWER" > < [61] "R_PLATFORM" "R_PRINTCMD" > < [63] "R_PROFILE" "R_PROFILE_USER" > < [65] "R_RD4PDF" "R_SESSION_TMPDIR" > < [67] "R_SHARE_DIR" "R_SYSTEM_ABI" > < [69] "R_TEXI2DVICMD" "R_UNZIPCMD" > < [71] "R_VERSION" "R_ZIPCMD" > < [73] "SED" "SESSION" > < [77] "SHELL" "SHLVL" > < [79] "SSH_AGENT_PID" "SSH_AUTH_SOCK" > < [81] "TAR" "TERM" > < [83] "TEXINPUTS" "UPSTART_EVENTS" > < [85] "UPSTART_INSTANCE" "UPSTART_JOB" > < [87] "UPSTART_SESSION" "USER" > < [89] "WINDOWID" "XAUTHORITY" > < [91] "XDG_CONFIG_DIRS" "XDG_CURRENT_DESKTOP" > < [93] "XDG_DATA_DIRS" "XDG_GREETER_DATA_DIR" > < [95] "XDG_MENU_PREFIX" "XDG_RUNTIME_DIR" > < [97] "XDG_SEAT" "XDG_SEAT_PATH" > < [99] "XDG_SESSION_DESKTOP" "XDG_SESSION_ID" > < [101] "XDG_SESSION_PATH" "XDG_SESSION_TYPE" > < [103] "XDG_VTNR" "XMODIFIERS" > --- > > [35] "MAKE_TERMERR" "MAKE_TERMOUT" > > [37] "MANDATORY_PATH" "MFLAGS" > > [39] "PAGER" "PATH" > > [41] "PWD" "QT4_IM_MODULE" > > [43] "QT_ACCESSIBILITY" "QT_IM_MODULE" > > [45] "QT_LINUX_ACCESSIBILITY_ALWAYS_ON" "R_ARCH" > > [47] "R_BROWSER" "R_BZIPCMD" > > [49] "R_CMD" "R_DOC_DIR" > > [51] "R_ENVIRON" "R_ENVIRON_USER" > > [53] "R_GZIPCMD" "R_HOME" > > [55] "R_INCLUDE_DIR" "R_LIBS" > > [57] "R_LIBS_SITE" "R_LIBS_USER" > > [59] "R_OSTYPE" "R_PAPERSIZE" > > [61] "R_PAPERSIZE_USER" "R_PDFVIEWER" > > [63] "R_PLATFORM" "R_PRINTCMD" > > [65] "R_PROFILE" "R_PROFILE_USER" > > [67] "R_RD4PDF" "R_SESSION_TMPDIR" > > [69] "R_SHARE_DIR" "R_SYSTEM_ABI" > > [71] "R_TEXI2DVICMD" "R_UNZIPCMD" > > [73] "R_VERSION" "R_ZIPCMD" > > [75] "SED" "SESSION" > > [77] "SESSIONTYPE" "SESSION_MANAGER" > > [79] "SHELL" "SHLVL" > > [81] "SSH_AGENT_PID" "SSH_AUTH_SOCK" > > [83] "TAR" "TERM" > > [85] "TEXINPUTS" "UPSTART_EVENTS" > > [87] "UPSTART_INSTANCE" "UPSTART_JOB" > > [89] "UPSTART_SESSION" "USER" > > [91] "WINDOWID" "XAUTHORITY" > > [93] "XDG_CONFIG_DIRS" "XDG_CURRENT_DESKTOP" > > [95] "XDG_DATA_DIRS" "XDG_GREETER_DATA_DIR" > > [97] "XDG_MENU_PREFIX" "XDG_RUNTIME_DIR" > > [99] "XDG_SEAT" "XDG_SEAT_PATH" > > [101] "XDG_SESSION_DESKTOP" "XDG_SESSION_ID" > > [103] "XDG_SESSION_PATH" "XDG_SESSION_TYPE" > > [105] "XDG_VTNR" "XMODIFIERS" > 7903a7905,7906 > > MAKE_TERMERR: /dev/pts/10 > > MAKE_TERMOUT: /dev/pts/10 > 7936c7939 > < R_SESSION_TMPDIR: /tmp/RtmpSrm93R > --- > > R_SESSION_TMPDIR: /tmp/RtmpFkpTbp > 11007c11010 > < [37] "tests" "tools" "zzz" > --- > > [37] "tests" "tools" > Testing examples for package ‘tools’ > comparing ‘tools-Ex.Rout’ to ‘tools-Ex.Rout.save’ ... OK > Testing examples for package ‘utils’ > comparing ‘utils-Ex.Rout’ to ‘utils-Ex.Rout.prev’ ... OK > Testing examples for package ‘grDevices’ > comparing ‘grDevices-Ex.Rout’ to ‘grDevices-Ex.Rout.save’ ... OK > Testing examples for package ‘graphics’ > comparing ‘graphics-Ex.Rout’ to ‘graphics-Ex.Rout.save’ ... OK > Testing examples for package ‘stats’ > comparing ‘stats-Ex.Rout’ to ‘stats-Ex.Rout.save’ ... OK > Testing examples for package ‘datasets’ > comparing ‘datasets-Ex.Rout’ to ‘datasets-Ex.Rout.save’ ... OK > Testing examples for package ‘methods’ > comparing ‘methods-Ex.Rout’ to ‘methods-Ex.Rout.prev’ ... OK > Testing examples for package ‘grid’ > comparing ‘grid-Ex.Rout’ to ‘grid-Ex.Rout.save’ ... OK > Testing examples for package ‘splines’ > comparing ‘splines-Ex.Rout’ to ‘splines-Ex.Rout.save’ ... OK > Testing examples for package ‘stats4’ > comparing ‘stats4-Ex.Rout’ to ‘stats4-Ex.Rout.save’ ... OK > Testing examples for package ‘tcltk’ > comparing ‘tcltk-Ex.Rout’ to ‘tcltk-Ex.Rout.prev’ ... OK > Testing examples for package ‘compiler’ > comparing ‘compiler-Ex.Rout’ to ‘compiler-Ex.Rout.prev’ ... OK > Testing examples for package ‘parallel’ > comparing ‘parallel-Ex.Rout’ to ‘parallel-Ex.Rout.prev’ ... OK > make[3]: Leaving directory '/usr/local/src/R-devel/tests/Examples' > make[2]: Leaving directory '/usr/local/src/R-devel/tests' > make[2]: Entering directory '/usr/local/src/R-devel/tests' > running strict specific tests > make[3]: Entering directory '/usr/local/src/R-devel/tests' > running code in 'eval-etc.R' ... OK > comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK > running code in 'simple-true.R' ... OK > comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK > running code in 'arith-true.R' ... OK > comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK > running code in 'arith.R' ... OK > comparing 'arith.Rout' to './arith.Rout.save' ... OK > running code in 'lm-tests.R' ... OK > comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK > running code in 'ok-errors.R' ... OK > comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK > running code in 'method-dispatch.R' ... OK > comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK > running code in 'any-all.R' ... OK > comparing 'any-all.Rout' to './any-all.Rout.save' ... OK > running code in 'd-p-q-r-tests.R' ... OK > comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK > make[3]: Leaving directory '/usr/local/src/R-devel/tests' > running sloppy specific tests > make[3]: Entering directory '/usr/local/src/R-devel/tests' > running code in 'complex.R' ... OK > comparing 'complex.Rout' to './complex.Rout.save' ... OK > running code in 'print-tests.R' ... OK > comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK > running code in 'lapack.R' ... OK > comparing 'lapack.Rout' to './lapack.Rout.save' ... OK > running code in 'datasets.R' ... OK > comparing 'datasets.Rout' to './datasets.Rout.save' ... OK > running code in 'datetime.R' ... OK > comparing 'datetime.Rout' to './datetime.Rout.save' ... OK > running code in 'iec60559.R' ... OK > comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK > make[3]: Leaving directory '/usr/local/src/R-devel/tests' > make[2]: Leaving directory '/usr/local/src/R-devel/tests' > make[2]: Entering directory '/usr/local/src/R-devel/tests' > running regression tests ... > make[3]: Entering directory '/usr/local/src/R-devel/tests' > running code in 'array-subset.R' ... OK > running code in 'reg-tests-1a.R' ... OK > running code in 'reg-tests-1b.R' ... OK > running code in 'reg-tests-1c.R' ... OK > running code in 'reg-tests-1d.R' ... OK > running code in 'reg-tests-2.R' ... OK > comparing 'reg-tests-2.Rout' to './reg-tests-2.Rout.save' ... OK > running code in 'reg-examples1.R' ... OK > running code in 'reg-examples2.R' ... OK > running code in 'reg-packages.R' ... OK > running code in 'p-qbeta-strict-tst.R' ... OK > running code in 'r-strict-tst.R' ... OK > running code in 'reg-IO.R' ... OK > comparing 'reg-IO.Rout' to './reg-IO.Rout.save' ... OK > running code in 'reg-IO2.R' ... OK > comparing 'reg-IO2.Rout' to './reg-IO2.Rout.save' ... OK > running code in 'reg-plot.R' ... OK > comparing 'reg-plot.pdf' to './reg-plot.pdf.save' ... OK > running code in 'reg-S4-examples.R' ... OK > running code in 'reg-BLAS.R' ... OK > make[3]: Leaving directory '/usr/local/src/R-devel/tests' > make[3]: Entering directory '/usr/local/src/R-devel/tests' > running code in 'reg-tests-3.R' ... OK > comparing 'reg-tests-3.Rout' to './reg-tests-3.Rout.save' ... OK > running code in 'reg-examples3.R' ...Makefile.common:98: recipe for target > 'reg- > examples3.Rout' failed > make[3]: *** [reg-examples3.Rout] Error 1 > make[3]: Leaving directory '/usr/local/src/R-devel/tests' > Makefile.common:273: recipe for target 'test-Reg' failed > make[2]: *** [test-Reg] Error 2 > make[2]: Leaving directory '/usr/local/src/R-devel/tests' > Makefile.common:165: recipe for target 'test-all-basics' failed > make[1]: *** [test-all-basics] Error 1 > make[1]: Leaving directory '/usr/local/src/R-devel/tests' > Makefile:239: recipe for target 'check-all' failed > make: *** [check-all] Error 2 > > ______________________________________________ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Office: A 4.23 Email: pd....@cbs.dk Priv: pda...@gmail.com ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel