From the R-admin manual ยง5:
'Various environment variables can be set to determine where R creates
its per-session temporary directory. The environment variables TMPDIR,
TMP and TEMP are searched in turn and the first one which is set and
points to a writable area is used. If none do, the final default is /tmp
on Unix-alikes and the value of R_USER on Windows. The path should be an
absolute path not containing spaces (and it is best to avoid
non-alphanumeric characters such as +).
Some Unix-alike systems are set up to remove files and directories
periodically from /tmp, for example by a cron job running tmpwatch. Set
TMPDIR to another directory before starting long-running jobs on such a
system.'
On 21/04/2017 11:49, Mikko Korpela wrote:
Temporary files not accessed for a long time are automatically removed
in some Linux distributions and probably other operating systems too,
depending on system configuration. This may affect the per-session
temporary directory, the path of which is returned by tempdir(). I think
Not for those who follow the manual and know that sysadmnins have
enabled such a script.
it would be nice if R automatically tried to recreate a missing
tempdir() but this could have some performance implications.
I ran the same test (below) on R 3.3.3 patched, R 3.4.0 beta, and
R-devel, all at r72499 (2017-04-09) and compiled by myself. The results
from the test were practically identical on all of those versions, the
test platform being Ubuntu 14.04.5 LTS. This system is configured for a
/tmp cleanup threshold of 7 days of inactivity (which is the default).
After a wait of roughly 10 days, the R temporary directory had been
deleted by an automatic cleanup procedure, and a call to `?` failed.
This StackExchange question has some answers about the Ubuntu /tmp
cleanup practice: https://askubuntu.com/q/20783
a <- print(tempdir())
# [1] "/tmp/user/1069138/RtmpGc9M5z"
dir.exists(a) # TRUE
# [1] TRUE
Sys.time()
# [1] "2017-04-10 16:00:30 EEST"
## Wait for one week (Ubuntu 14.04.5 LTS)
print(Sys.time()); ?regex
# [1] "2017-04-20 14:17:29 EEST"
# Error in file(out, "wt") : cannot open the connection
# In addition: Warning message:
# In file(out, "wt") :
# cannot open file '/tmp/user/1069138/RtmpGc9M5z/Rtxt3dbb65870ad4': No
such file or directory
b <- print(tempdir())
# [1] "/tmp/user/1069138/RtmpGc9M5z"
identical(a, b)
# [1] TRUE
dir.exists(b)
# [1] FALSE
--
Brian D. Ripley, rip...@stats.ox.ac.uk
Emeritus Professor of Applied Statistics, University of Oxford
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