> On 6 Jul 2017, at 23:26 , Gabriel Becker <gmbec...@ucdavis.edu> wrote: > > Hi all, > > I'm getting an issue with Rdevel where make check-recommended hangs > consistently for me on Mac El Capitan when checking the Matrix package. I > did svn update and tools/rsync_recommended earlier today and it didn't fix > the issue. > > Specifically, it is hanging on the > > * checking dependencies in R code ...
Not happening for me on Sierra, it seems. However, I have a minimal source install of R-devel, so that * checking package dependencies ... NOTE Package suggested but not available for checking: ‘expm’ Packages which this enhances but not available for checking: ‘MatrixModels’ ‘graph’ ‘SparseM’ ‘sfsmisc’ ... and it is thinkable that the issue is with one of those(?) -pd > > > stage (while checking Matrix, it passes fine for MASS and lattice). > Currently I'm getting the same behavior when I do > > tools:::.check_packages("<builddir>/tests/RecPackages/Matrix") > > > Is this a known issue and if not, do other people see this behavior? > > Best, > ~G > > > Various info: > > Build script: > > #!/bin/bash > > export CC="gcc -std=gnu99 -fsanitize=address" > # make -O0 if we want full debugging symbols > export CFLAGS="-fno-omit-frame-pointer -g -O2 -Wall -pedantic -mtune=native" > #export CFLAGS="-fno-omit-frame-pointer -g -O0 -Wall -pedantic > -mtune=native" > > export CXX="g++ -fsanitize=address -fno-omit-frame-pointer" > export F77="gfortran -arch x86_64" > export FC="gfortran -arch x86_64" > export MAIN_LDFLAGS=" -fsanitize=address" > > ../checkedout/Rsource/rawtrunk/configure > --prefix=/Users/beckerg4/local/Rdevel --enable-R-framework > --enable-memory-profiling > make -j3 > make install > > Svn Info: > > beckerg4-T4G3QN:rawtrunk beckerg4$ *svn info* > > Path: . > > Working Copy Root Path: /Users/beckerg4/gabe/checkedout/Rsource/rawtrunk > > URL: https://svn.r-project.org/R/trunk > > Relative URL: ^/trunk > > Repository Root: https://svn.r-project.org/R > > Repository UUID: 00db46b3-68df-0310-9c12-caf00c1e9a41 > > Revision: 72894 > > Node Kind: directory > > Schedule: normal > > Last Changed Author: lawrence > > Last Changed Rev: 72894 > > Last Changed Date: 2017-07-06 00:12:06 -0700 (Thu, 06 Jul 2017) > > > > Svn status (no local changes) > > beckerg4-T4G3QN:rawtrunk beckerg4$* svn status* > > beckerg4-T4G3QN:rawtrunk beckerg4$ > > > Session info after Matrix is attached: > > *> library(Matrix)* > > *> sessionInfo()* > > R Under development (unstable) (2017-07-06 r72894) > > Platform: x86_64-apple-darwin15.6.0 (64-bit) > > Running under: OS X El Capitan 10.11.6 > > > Matrix products: default > > BLAS: /Users/beckerg4/gabe/Rdevelbuild/lib/libRblas.dylib > > LAPACK: /Users/beckerg4/gabe/Rdevelbuild/lib/libRlapack.dylib > > > locale: > > [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 > > > attached base packages: > > [1] stats graphics grDevices utils datasets methods base > > > other attached packages: > > [1] Matrix_1.2-10 > > > loaded via a namespace (and not attached): > > [1] compiler_3.5.0 grid_3.5.0 lattice_0.20-35 > > > > -- > Gabriel Becker, PhD > Associate Scientist (Bioinformatics) > Genentech Research > > [[alternative HTML version deleted]] > > ______________________________________________ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Office: A 4.23 Email: pd....@cbs.dk Priv: pda...@gmail.com ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel