>>>>> Wim R Cardoen writes: > Hello, > I experienced a compiler error when I tried to compile the latest version > of R i.e. R4.0.2 > making iosupport.d from iosupport.c > making lapack.d from lapack.c > making list.d from list.c > making localecharset.d from localecharset.c > grep.c(74): catastrophic error: cannot open source file "pcre2.h" > # include<pcre2.h> > (The pcre2.h header file is actually present!)
> I used the following compiler flags: > # PCRE2: > # ----- > setenv CC gcc > setenv CFLAGS " -O2 -fPIC " > ./configure --prefix=/uufs/chpc.utah.edu/sys/installdir/pcre2/10.35 \ > --enable-pcre2-16 --enable-pcre2-32 --with-pic > module purge > module load intel/2019.5.281 > # USe a modern version of curl & pcre2 (The current one on Centos 7 is TOO > old) > setenv CURLDIR "/uufs/chpc.utah.edu/sys/installdir/curl/7.65.3" > setenv PCRE2DIR "/uufs/chpc.utah.edu/sys/installdir/pcre2/10.35" > setenv PATH ${PCRE2DIR}/bin:$PATH > Setting Compiler & linker flags: > setenv CC icc > setenv CXX icpc > setenv F77 ifort > setenv FC ifort > setenv CFLAGS " -axCORE-AVX512,CORE-AVX2,AVX,SSE4.2 -O3 -qopenmp > -fp-model precise -fPIC -I${MKLROOT}/include -I${CURLDIR}/include > -I${PCRE2DIR}/include " What I guess you should do is /path/to/configure CPPFLAGS="-I${PCRE2DIR}/include ......" make Hth -k > setenv CXXFLAGS " ${CFLAGS} " > setenv FFLAGS " ${CFLAGS} " > setenv FCFLAGS " ${CFLAGS} " > setenv LDFLAGS " -Wl,-rpath=${MKLROOT}/lib/intel64_lin > -L${MKLROOT}/lib/intel64_lin -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core > -Wl,-rpath=/uufs/ > chpc.utah.edu/sys/installdir/intel/compilers_and_libraries_2019.5.281/linux/compiler/lib/intel64_lin > -L/uufs/ > chpc.utah.edu/sys/installdir/intel/compilers_and_libraries_2019.5.281/linux/compiler/lib/intel64_lin > -liomp5 -lpthread -ldl -Wl,-rpath=${CURLDIR}/lib > -L${CURLDIR}/lib -lcurl > -Wl,-rpath=${PCRE2DIR}/lib -L${PCRE2DIR}/lib > -lpcre2-8 -lpcre2-posix " > ./configure --prefix=/uufs/chpc.utah.edu/sys/installdir/R/4.0.2i > --enable-R-profiling --enable-R-shlib --enable-memory-profiling > --enable-java --enable-shared=yes --with-blas="$LDFLAGS" --with-readline > --with-cairo --with-tcltk --with-libpng --with-jpeglib --with-libtiff > --with-ICU --with-pic --with-x --with-lapack --with-pcre2 > I also appended the corresponding config.log: > Thank you, > Wim > ______________________________________________ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel