Hi, For (hopefully) full reproducibility:
docker run rocker/tidyverse:4.0.5 Rscript -e 'devtools::install_github("akersting/dumpTest", INSTALL_opts = "--with-keep.source"); library(dumpTest); for (i in 1:100) {print(i); print(system.time(f()))}' Regards, Andreas 2021-04-07 17:09 GMT+02:00 "Andreas Kersting" <r-de...@akersting.de>: > Hi Dirk, hi Luke, > > Thanks for checking! > > I could narrow it down further. I have the issue only if I install > --with-keep.source, i.e. > > R CMD INSTALL --with-keep.source dumpTest > > Since this is the default in RStudio when clicking "Install and Restart", I > was always having the issue - also from base R. If I install using e.g. > devtools::install_github() directly it is also fine for me. > > Could you please confirm? Thanks! > > Regards, > Andreas > > 2021-04-07 16:20 GMT+02:00 "Dirk Eddelbuettel" <e...@debian.org>: >> >> On 7 April 2021 at 16:06, Andreas Kersting wrote: >> | Hi Luke, >> | >> | Please see https://github.com/akersting/dumpTest for the package. >> | >> | Here a session showing my issue: >> | >> | > library(dumpTest) >> | > sessionInfo() >> | R version 4.0.5 (2021-03-31) >> | Platform: x86_64-pc-linux-gnu (64-bit) >> | Running under: Debian GNU/Linux 10 (buster) >> | >> | Matrix products: default >> | BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.8.0 >> | LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.8.0 >> | >> | locale: >> | [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C >> | [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 >> | [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 >> | [7] LC_PAPER=en_US.UTF-8 LC_NAME=C >> | [9] LC_ADDRESS=C LC_TELEPHONE=C >> | [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C >> | >> | attached base packages: >> | [1] stats graphics grDevices utils datasets methods base >> | >> | other attached packages: >> | [1] dumpTest_0.1.0 >> | >> | loaded via a namespace (and not attached): >> | [1] compiler_4.0.5 >> | > for (i in 1:100) { >> | + print(i) >> | + print(system.time(f())) >> | + } >> | [1] 1 >> | user system elapsed >> | 0.028 0.004 0.034 >> | [1] 2 >> | user system elapsed >> | 0.067 0.008 0.075 >> | [1] 3 >> | user system elapsed >> | 0.176 0.000 0.176 >> | [1] 4 >> | user system elapsed >> | 0.335 0.012 0.349 >> | [1] 5 >> | user system elapsed >> | 0.745 0.023 0.770 >> | [1] 6 >> | user system elapsed >> | 1.495 0.060 1.572 >> | [1] 7 >> | user system elapsed >> | 2.902 0.136 3.040 >> | [1] 8 >> | user system elapsed >> | 5.753 0.272 6.034 >> | [1] 9 >> | user system elapsed >> | 11.807 0.708 12.597 >> | [1] 10 >> | ^C >> | Timing stopped at: 6.638 0.549 7.214 >> | >> | I had to interrupt in iteration 10 because I was running low on RAM. >> >> No issue here. Ubuntu 20.10, R 4.0.5 'from CRAN' i.e. Michael's PPA build >> off my Debian package, hence instrumentation as in the Debian package. >> >> edd@rob:~$ installGithub.r akersting/dumpTest >> Using github PAT from envvar GITHUB_PAT >> Downloading GitHub repo akersting/dumpTest@HEAD >> ✔ checking for file >> ‘/tmp/remotes3f9af733166ccd/akersting-dumpTest-3bed8e2/DESCRIPTION’ ... >> ─ preparing ‘dumpTest’: >> ✔ checking DESCRIPTION meta-information ... >> ─ checking for LF line-endings in source and make files and shell scripts >> ─ checking for empty or unneeded directories >> ─ building ‘dumpTest_0.1.0.tar.gz’ >> >> Installing package into ‘/usr/local/lib/R/site-library’ >> (as ‘lib’ is unspecified) >> * installing *source* package ‘dumpTest’ ... >> ** using staged installation >> ** R >> ** byte-compile and prepare package for lazy loading >> ** help >> No man pages found in package ‘dumpTest’ >> *** installing help indices >> ** building package indices >> ** testing if installed package can be loaded from temporary location >> ** testing if installed package can be loaded from final location >> ** testing if installed package keeps a record of temporary installation path >> * DONE (dumpTest) >> edd@rob:~$ Rscript -e 'system.time({for (i in 1:100) dumpTest::f()})' >> user system elapsed >> 0.481 0.019 0.500 >> edd@rob:~$ >> >> (I also ran the variant you showed with the dual print statements, it just >> consumes more screen real estate and ends on >> >> [...] >> [1] 97 >> user system elapsed >> 0.004 0.000 0.005 >> [1] 98 >> >> user system elapsed >> 0.004 0.000 0.005 >> [1] 99 >> user system elapsed >> 0.004 0.000 0.004 >> >> [1] 100 >> >> user system elapsed >> >> 0.005 0.000 0.005 >> edd@rob:~$ ) >> >> Dirk >> >> -- >> https://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org >> > ______________________________________________ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel