On Tue, 13 Nov 2007, Muiser, EC wrote: > Thank you very much Alberto! Atleast I can see there is an error now. > The error however is strange. If I load the library in an R console it works > perfectly but the package seems not to exist if I run R from a script. The > library should be there. > > Errorlog: > > Error in library(tgp) : there is no package called 'tgp' > Execution halted > > more suggestions?
Read ?Startup : the startup files read depend on the working directory and the account. I expect one of them sets the library (the real meaning of the word, you do not 'load the library': you load packages) path or the R_LIBS environment variable. Please (both of you) stop sending mail to both [EMAIL PROTECTED] and r-help@r-project.org: they are the same thing. > Iwe Muiser > > --------------------------------------------- > Iwe E.C. Muiser, Student Bio-Informatics > Hanze Hogeschool Groningen > The Netherlands > Tel +31645700419 > E-mail [EMAIL PROTECTED] > --------------------------------------------- > > ________________________________ > > Fra: Alberto Monteiro [mailto:[EMAIL PROTECTED] > Sendt: ti 13-11-2007 14:23 > Til: Muiser, EC; [EMAIL PROTECTED] > Kopi: r-help@r-project.org > Emne: Re: [R] script fails because of library loading > > > > > Muiser, EC wrote: >> >> The php script executes the following command: "/usr/bin/R --quiet -- >> slave < /perl/outfiles/Rscript19785065.R >> /perl/outfiles/error19785065.txt" > >> Also there is no errorlog (in >> "/perl/outfiles/error19785065.txt") > > This part is easy: the error output should go to 2> and not to >, > like this: > > "/usr/bin/R --quiet --slave < /perl/outfiles/Rscript19785065.R > > /perl/outfiles/error19785065.txt 2> error.log" > > Alberto Monteiro > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595 ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
