Hi Joris,
I guess i did it wrong again.
but your example didn't work either. I still get the error massage.
but replicate function just fine. I can even replicate the whole array
lines.
THX
Assa
On Thu, Jul 8, 2010 at 15:20, Joris Meys <jorism...@gmail.com> wrote:
> Don't know what exactly you're trying to do, but you make a matrix
> with 11 columns and 50 rows, then treat it as a vector. On top of
> that, you try to fill 50 rows/columns with 50 values. Off course that
> doesn't work. Did you check the warning messages when running the
> code?
>
> Either do :
>
> for(i in c(1:11)){
> set[,i] <-sample(x,50)
> print(c(i,"->", set), quote = FALSE)
> }
>
> or
>
> for(i in c(1:50)){
> set[i,] <-sample(x,11)
> print(c(i,"->", set), quote = FALSE)
> }
>
> Or just forget about the loop altogether and do :
>
> set <- replicate(11,sample(x,50))
> or
> set <- t(replicate(50,sample(x,11)))
>
> cheers
>
> On Thu, Jul 8, 2010 at 8:04 AM, Assa Yeroslaviz <fry...@gmail.com> wrote:
> > Hello R users,
> >
> > I'm trying to extract random samples from a big array I have.
> >
> > I have a data frame of over 40k lines and would like to produce around 50
> > random sample of around 200 lines each from this array.
> >
> > this is the matrix
> > ID xxx_1c xxx__2c xxx__3c xxx__4c xxx__5T xxx__6T xxx__7T
> xxx__8T
> > yyy_1c yyy_1c _2c
> > 1 A_512 2.150295 2.681759 2.177138 2.142790 2.115344 2.013047
> > 2.115634 2.189372 1.643328 1.563523
> > 2 A_134 12.832488 12.596373 12.882581 12.987091 11.956149 11.994779
> > 11.650336 11.995504 13.024494 12.776322
> > 3 A_152 2.063276 2.160961 2.067549 2.059732 2.656416 2.075775
> > 2.033982 2.111937 1.606340 1.548940
> > 4 A_163 9.570761 10.448615 9.432859 9.732615 10.354234 10.993279
> > 9.160038 9.104121 10.079177 9.828757
> > 5 A_184 3.574271 4.680859 4.517047 4.047096 3.623668 3.021356
> > 3.559434 3.156093 4.308437 4.045098
> > 6 A_199 7.593952 7.454087 7.513013 7.449552 7.345718 7.367068
> > 7.410085 7.022582 7.668616 7.953706
> > ...
> >
> > I tried to do it with a for loop:
> >
> > genelist <- read.delim("/user/R/raw_data.txt")
> > rownames(genelist) <- genelist[,1]
> > genes <- rownames(genelist)
> >
> > x <- 1:40000
> > set <- matrix(nrow = 50, ncol = 11)
> >
> > for(i in c(1:50)){
> > set[i] <-sample(x,50)
> > print(c(i,"->", set), quote = FALSE)
> > }
> >
> > which basically do the trick, but I just can't save the results outside
> the
> > loop.
> > After having the random sets of lines it wasn't a problem to extract the
> > line from the arrays using subset.
> >
> > genSet1 <-sample(x,50)
> > random1 <- genes %in% genSet1
> > subsetGenelist <- subset(genelist, random1)
> >
> >
> > is there a different way of creating these random vectors or saving the
> loop
> > results outside tjhe loop so I cn work with them?
> >
> > Thanks a lot
> >
> > Assa
> >
> > [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > R-help@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
> >
>
>
>
> --
> Joris Meys
> Statistical consultant
>
> Ghent University
> Faculty of Bioscience Engineering
> Department of Applied mathematics, biometrics and process control
>
> tel : +32 9 264 59 87
> joris.m...@ugent.be
> -------------------------------
> Disclaimer : http://helpdesk.ugent.be/e-maildisclaimer.php
>
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