I have the same problem of a previous request
HOW to use the survivalROC (or another library in R) to get optimal
cut-off values?
I want to use the time-dependent survivalROC package.according to
the,reference
material,it only gives a partial set of ordered cut-off values .eg.
--------------------------------------------------------------------------------
data(mayo)
str(mayo)
attach(mayo)
ROC.1=survivalROC(Stime=time,status=censor,marker=mayoscore4,predict.time=365,lambda=0.05)
str(ROC.1)
plot(ROC.1$FP, ROC.1$TP, type="l", xlim=c(0,1), ylim=c(0,1),
xlab=paste( "FP", "\n",
"AUC = ",round(ROC.1$AUC,3)), ylab="TP",main="Mayoscore 4, Method =
NNE \n Year = 1")
abline(0,1)
List of 6
$ cut.values : num [1:313] -Inf 4.58 4.9 4.93 4.93 ... *only 5 values
* $ TP : num [1:313] 1 0.999 0.999 0.999 0.998 ...
$ FP : num [1:313] 1 0.997 0.993 0.99 0.987 ...
$ predict.time: num 365
$ Survival : num 0.93
$ AUC : num 0.888
--------------------------------------------------------------------------------
In particular I'm unable to see and print all values after str(ROC.1)
and NOT only the 5 values listed above in the example in order to to
get optimal cut-off values
Thank you very much!
Mario Petretta
Dipartimento di Medicina Clinica Scienze Cardiovascolari e Immunologiche
Facoltà di Medicina e Chirurgia
Università di Napoli Federico II
081 - 7462233
Mario Petretta
Dipartimento di Medicina Clinica Scienze Cardiovascolari e Immunologiche
Facoltà di Medicina e Chirurgia
Università di Napoli Federico II
081 - 7462233
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