On 1/12/11 6:44 PM, Duke wrote:
Thanks so much for your suggestion Martin. I had Bioconductor installed but I honestly do not know all its applications. Anyway, I am testing GenomicRanges with my data now. I will report back when I get the result.
I got the results. My code took ~ 580 min ( ~ 10 hrs) to finish, where as using GenomicRanges per Martin suggested, it took only 22 min (about 30 times less!). Thanks so much for this improvement Martin.
D. ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
