The simecol package is maybe what you want.
http://hhbio.wasser.tu-dresden.de/projects/simecol/
http://hhbio.wasser.tu-dresden.de/projects/simecol/ 

Another possibility is to use a program i've written.
Here is a flash presentation maybe also interesting for you.
http://www.uni-bielefeld.de/biologie/Oekosystembiologie/bio7app/flashtut/animaterplot.htm
http://www.uni-bielefeld.de/biologie/Oekosystembiologie/bio7app/flashtut/animaterplot.htm
 

With kind regards
Marcel

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