Hi all, I have been struggling with this problem for a few days.
I have a data table like this: gene rpkm1 diff1 rpkm2 diff2 gene1 23 50 13 120 gene2 111 220 827 1200 gene3 75 998 71 910 And I want to re-format it so that, for each gene, I have a 2x2 contingency table, such as: gene rpkm diff gene1 23 50 gene1 13 120 gene2 111 220 gene2 827 1200 gene3 75 998 gene3 71 910 I have found one post with the same problem (http://r.789695.n4.nabble.com/R-Reshape-into-a-contingency-table-Fisher-s-test-td809122.html), but the response was very customized for that format, and I haven't been able to implement it for my need. After the table is re-formatted, I know how to do all the splitting and fisher tests. All I need is the re-shaping of the table, which will have ~9000 genes in it. Any insights are greatly appreciated! fbarreto -- View this message in context: http://r.789695.n4.nabble.com/reshaping-list-into-a-contingency-table-tp3323130p3323130.html Sent from the R help mailing list archive at Nabble.com. ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
