On Mon, 4 Apr 2011, Andrew Yee wrote:

This has to do with using pipe() and grep and read.csv()

I have a .csv file that I grep using pipe() and read.csv() as follows:

read.csv(pipe('grep foo bar.csv'))

However, is there a way to have this command run when for example,
there is no "foo" text in the bar.csv file?  I get an error message
(appropriately):

Error in read.table(file = file, header = header, sep = sep, quote = quote,  :
 no lines available in input

Is there a way to "inspect" the output of pipe before passing it on to
read.csv()?

You have to read from a pipe to 'inspect' it.  So

tmp <- readLines(pipe('grep foo bar.csv'))
if(!length(tmp)) do something else
else {
  res <- read.csv(con <- textConnection(tmp))
  close(con)
}

OTOH, unless the file is enormous you could simply read it into R and use grep(value = TRUE) on the character vector.


Thanks,
Andrew

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--
Brian D. Ripley,                  rip...@stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
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