On Apr 11, 2011, at 6:28 PM, Josh B wrote:
Follow-up question:
I want to make the gene name bold and italic, AND make the "p"
number just bold. But here's the catch: now I want the "p" number to
appear as a superscript!
I am no longer clear (if I ever was) what the "p number might be, but
here is my guess:
main = bquote(italic(.(x[i,1]))*bolditalic(" p")^.(as.character(x[i,
2])))
For more than a guess, post a worked example, please.
--
David.
For instance: TFL1^687 (the carrot is to indicate that I actually
want the "p" number as a superscript).
Thanks very much in advance!
Sincerely,
Josh Banta
From: David Winsemius <dwinsem...@comcast.net>
To: Josh B <josh...@yahoo.com>
Sent: Sat, February 19, 2011 10:24:03 PM
Subject: Re: [R] Partial italic in graph titles when looping
On Feb 19, 2011, at 8:52 PM, Josh B wrote:
> Follow-up question: how would I make the gene name italic AND
bold, and how would I make the " p" and the number just bold?
Could also work inside teh .() function
for (i in 1:nrow(x)){
plot(z <- sort(rnorm(47)), type = "s", main = "")
points(z, cex = .5, col = "dark red")
title(main = bquote(italic(.(x[i,1]))*bold(" p")*bold(.
(as.character(x[i,2])))))
}
>
> From: David Winsemius <dwinsem...@comcast.net>
> To: Josh B <josh...@yahoo.com>
> Cc: R Help <r-help@r-project.org>
> Sent: Sat, February 19, 2011 8:33:33 PM
> Subject: Re: [R]Partial italic in graph titles when looping
>
>
> On Feb 19, 2011, at 7:41 PM, Josh B wrote:
>
> > Dear all,
> >
> > I have a rather complicated problem. I am trying to loop through
making graphs,
> > so that the graph-making process is fully automated. For each
graph, I'd like to
> > make sure the corresponding title is formatted properly. The
titles will be a
> > combination of a gene name and numerical position within the
gene. The gene name
> > should be italic-bold, whereas the gene position should be just
bold.
> >
> > Consider the following:
> >
> > x <- read.table(textConnection("gene position
> > FLC 3312
> > TFL1 687
> > GA1 1127"), header = TRUE, as.is = TRUE)
> > closeAllConnections()
> >
> > Now this, below, is essentially how I am automating the graph-
making (imagine
> > these graphs contain some sort of real data):
> >
> > par(mfrow = c(3,1))
> > for (i in 1:nrow(x)){
> > plot(z <- sort(rnorm(47)), type = "s", main = "")
> > points(z, cex = .5, col = "dark red")
> > title(main = paste(x[i,1], " p", x[i,2], sep = ""))
> > }
> >
> Or perhaps (with a shuffling of the parens):
> for (i in 1:nrow(x)){
> plot(z <- sort(rnorm(47)), type = "s", main = "")
> points(z, cex = .5, col = "dark red")
> title(main = bquote(italic(.(x[i,1]))*" p"*.(x[i,2])))
> }
>
> > The graphs produced by this method are almost perfect, except
that the gene
> > names are not italicized (they SHOULD be).
> >
> >
> > So, once again, the big question is: how would I italicize the
gene names but
> > NOT the gene positions, when looping through to make these
graphs and graph
> > titles? If I WASN'T looping to make my graph titles, I could
write:
> >
> > title(main = expression(paste(bolditalic("FLC"), bold("p3312"),
sep = " ")))
> >
> > ...but I can't do that, because I'm looping (or can I?)
> >
> > Thanks in advance for your help!
> >
> > -----------------------------------
> > Josh Banta, Ph.D
> > Center for Genomics and Systems Biology
> > New York University
> > 100 Washington Square East
> > New York, NY 10003
> > Tel: (212) 998-8465
> > http://plantevolutionaryecology.org
> >
> >
> >
> > [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > R-help@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
>
> David Winsemius, MD
> West Hartford, CT
>
>
>
David Winsemius, MD
West Hartford, CT
David Winsemius, MD
Heritage Laboratories
West Hartford, CT
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