Hello All,
I'm trying to install rJava in ubuntu, and ended up with the following:
~$ sudo R CMD javareconf JAVAC=/usr/lib/jvm/java-6-openjdk/jre/../bin/javac
JAR=/usr/bin/jar JAVAH=/usr/bin/javah
Java interpreter : /usr/bin/java
Java version : 1.6.0_24
Java home path : /usr/lib/jvm/java-6-sun-1.6.0.24/jre
/usr/lib64/R/bin/javareconf: 158:
/usr/lib/jvm/java-6-openjdk/jre/../bin/javac: not found
Java compiler : not functional
Java headers gen.: /usr/bin/javah
Java archive tool: /usr/bin/jar
Java library path:
$(JAVA_HOME)/lib/amd64/server:$(JAVA_HOME)/lib/amd64:$(JAVA_HOME)/../lib/amd64:/usr/java/packages/lib/amd64:/usr/lib64:/lib64:/lib:/usr/lib
JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -L$(JAVA_HOME)/lib/amd64
-L$(JAVA_HOME)/../lib/amd64 -L/usr/java/packages/lib/amd64 -L/usr/lib64
-L/lib64 -L/lib -L/usr/lib -ljvm
JNI cpp flags : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linux
Updating Java configuration in /etc/R
Done.
I'm guessing that the problem lies in the line with
"/usr/lib64/R/bin/javareconf: 158:
/usr/lib/jvm/java-6-openjdk/jre/../bin/javac: not found", leading to the
"not functional" Java compiler. How would I solve this issue?
--
Best,
Dat Mai
PhD Rotation Student
Albert Einstein College of Medicine
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