Thank you David and Steve,

Yes all this data are already in R and in csv files.
Sorry for not being clear.

I have this:

Codes1and3[1:5,c(1:5)]
        Mark_2 pop      Mark_1  Mark_3 age 
1       P       A1      139     alpha   2   
2       P       A1      140     alpha   2   
3       P       A1      141     gamma   2   
4       S       A1      142    gamma   2   
5       S       A1      143    alpha   2   
6       T       A2      144     alpha   2   
7       T       A2      145     alpha   2   

I’m comparing Marks 1 and 3, then I need to know if the ones in Mark_2 in
the general table have 1 or more interactions with Mark 3. For example here
“P” appears in the same row than “alpha” and then in the same than “gamma”, 
then there are 2 interactions, so in a Boolean code it should be 1 (more
than1 interaction).
The same for “S”. But “T” only interacts with “alpha”, that will make it
only one interaction = 0.

The next colum I need is Code 1 referent to code 3 and in this case it
should look like this:
        Code 1_3 
1       1
2       1
3       1
4       1       
5       1
6       0

I have tried to count but, of course in this case it will always be one,
because they are linked in each row once, how can I consider the other rows?



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