Brian, I believe I had a similar problem. Make sure you have JDK (*sun-java6-jdk) * installed as well. Here is a link to a JDK install guide http://www.cyberciti.biz/faq/howto-ubuntu-linux-install-configure-jdk-jre/
On Mon, Aug 15, 2011 at 10:18 AM, Brian Lunergan <ff...@ncf.ca> wrote: > Morning All: > > Having problems installing this one into my R setup and wondered if > anyone on the list had the same problem and found a workable solution. > > First to the system particulars: > > OS is the Hardy Heron edition of Ubuntu Linux > R version is 2.13.1 > Java installation is sun-java6 > > Next up is the result of javareconf: > > R CMD javareconf > Java interpreter : /usr/bin/java > Java version : 1.5.0 > Java home path : /usr/lib/jvm/java-1.5.0-gcj-4.2-1.5.0.0/jre > Java compiler : /usr/bin/javac > Java headers gen.: /usr/bin/javah > Java archive tool: /usr/bin/jar > Java library path: /usr/lib/../lib/gcj-4.2-81:/usr/lib/jni > JNI linker flags : -L/usr/lib/../lib/gcj-4.2-81 -L/usr/lib/jni -ljvm > JNI cpp flags : > > Updating Java configuration in /etc/R > Done. > > What little I've been able to find on this problem suggests that the > blank space beside the cpp flags variable is the key point, but all the > notes I found suggest programming solutions outside of my abilities. Are > there any simple and to the point solutions that correct this issue, or > am I SOL for using the package? Any help would be greatly appreciated as > install of other packages and R commander plugins depend on solving it. > Oh, yes. Here's the result when I try to pull in rJava. > > > install.packages() > Loading Tcl/Tk interface ... done > --- Please select a CRAN mirror for use in this session --- > Installing package(s) into /usr/local/lib/R/site-library > (as lib is unspecified) > trying URL 'http://cran.skazkaforyou.com/src/contrib/rJava_0.9-1.tar.gz' > Content type 'application/x-gzip' length 527197 bytes (514 Kb) > opened URL > ================================================== > downloaded 514 Kb > > * installing *source* package rJava ... > checking for gcc... gcc > checking for C compiler default output file name... a.out > checking whether the C compiler works... yes > checking whether we are cross compiling... no > checking for suffix of executables... > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether gcc accepts -g... yes > checking for gcc option to accept ISO C89... none needed > checking how to run the C preprocessor... gcc -E > checking for grep that handles long lines and -e... /bin/grep > checking for egrep... /bin/grep -E > checking for ANSI C header files... yes > checking for sys/wait.h that is POSIX.1 compatible... yes > checking for sys/types.h... yes > checking for sys/stat.h... yes > checking for stdlib.h... yes > checking for string.h... yes > checking for memory.h... yes > checking for strings.h... yes > checking for inttypes.h... yes > checking for stdint.h... yes > checking for unistd.h... yes > checking for string.h... (cached) yes > checking sys/time.h usability... yes > checking sys/time.h presence... yes > checking for sys/time.h... yes > checking for unistd.h... (cached) yes > checking for an ANSI C-conforming const... yes > checking whether time.h and sys/time.h may both be included... yes > configure: checking whether gcc supports static inline... > yes > checking whether setjmp.h is POSIX.1 compatible... yes > checking whether sigsetjmp is declared... yes > checking whether siglongjmp is declared... yes > checking Java support in R... present: > interpreter : '/usr/bin/java' > archiver : '/usr/bin/jar' > compiler : '/usr/bin/javac' > header prep.: '/usr/bin/javah' > cpp flags : '' > java libs : '-L/usr/lib/../lib/gcj-4.2-81 -L/usr/lib/jni -ljvm' > configure: error: One or more Java configuration variables are not set. > Make sure R is configured with full Java support (including JDK). Run > R CMD javareconf > as root to add Java support to R. > > If you don't have root privileges, run > R CMD javareconf -e > to set all Java-related variables and then install rJava. > > ERROR: configuration failed for package rJava > * removing /usr/local/lib/R/site-library/rJava > > The downloaded packages are in > /tmp/Rtmph5lTVR/downloaded_packages > Warning message: > In install.packages() : > installation of package 'rJava' had non-zero exit status > > > > > -- > Brian Lunergan > Nepean, Ontario > Canada > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html<http://www.r-project.org/posting-guide.html> > and provide commented, minimal, self-contained, reproducible code. > -- Joseph C. Magagnoli [[alternative HTML version deleted]]
______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.