On Dec 9, 2011, at 2:50 PM, Uwe Ligges wrote:
On 09.12.2011 20:41, Vining, Kelly wrote:
Thanks for the tip on "cut," seems like it should work. I must
still be missing something, though. Here, I'm cutting on the y
variable, then attempting the boxplot:
cutRPKM<- cut(count$RPKM, breaks=4)
head(cutRPKM)
[1] (-0.0995,24.8] (-0.0995,24.8] (-0.0995,24.8] (-0.0995,24.8]
(-0.0995,24.8]
[6] (-0.0995,24.8]
Levels: (-0.0995,24.8] (24.8,49.8] (49.8,74.7] (74.7,99.6]
boxplot(as.numeric(cutRPKM))
This gives me a single box instead of five boxes. ??
You obviously want:
boxplot(count$RPKM ~ cut(count$RPKM, breaks=seq(0, max(count$RPKM),
by=100)))
In that context (having defined a cut-variable with single-integer
break argument), would have thought this should work:
boxplot(count$RPKM ~ cutRPKM)
--
David.
Uwe Ligges
Thanks again,
--Kelly V.
________________________________________
From: David Winsemius [dwinsem...@comcast.net]
Sent: Friday, December 09, 2011 11:14 AM
To: Vining, Kelly
Cc: r-help@r-project.org
Subject: Re: [R] scatterplot to boxplot translation?
On Dec 9, 2011, at 2:11 PM, Vining, Kelly wrote:
My apologies if anyone is seeing this twice...looks like my previous
message didn't come through...
Dear UseRs,
I have a feeling this is a relatively simple question, but I'm
having a hard time getting my head around it. I have a simple x-y
scatterplot with many points, as shown below(attached). I'd like to
make a boxplot of this by interval, such that there is one box
representing the points in the 0-100 interval, one for the 101-200
interval, and so on. How do I structure my R data frame to be able
to generate such a boxplot?
?cut
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org
] On Behalf Of Vining, Kelly
Sent: Friday, December 09, 2011 11:01 AM
To: r-help@r-project.org
Subject: [R] scatterplot to boxplot translation?
<C_count_vs_RPKM.png>______________________________________________
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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David Winsemius, MD
West Hartford, CT
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
David Winsemius, MD
West Hartford, CT
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
