On Feb 9, 2012, at 4:45 PM, array chip wrote:

Hi, didn't hear any response yet. want to give it another try.. appreciate any suggestions.


My problem after reading this the first time was that I didn't agree with the premise that logistic regression would provide a standard error for a probability. It provides a standard error around an estimated coefficient value. And then you provided no further details or code to create a simulation, and there didn't seem much point in trying to teach you statistical terminology that you were throwning around in a manner that seems rather cavalier , .... admittedly this being a very particular reaction from this non-expert audience of one.


John


________________________________

To: "r-help@r-project.org" <r-help@r-project.org>
Sent: Wednesday, February 8, 2012 12:11 PM
Subject: [R] standard error for lda()

Hi, I am wondering if it is possible to get an estimate of standard error of the predicted posterior probability from LDA using lda() from MASS? Logistic regression using glm() would generate a standard error for predicted probability with se.fit=T argument in predict(), so would it make sense to get standard error for posterior probability from lda() and how?

Another question about standard error estimate from glm(): is it ok to calculate 95% CI for the predicted probability using the standard error based on normal apprximation, i.e. predicted_probability +/- 1.96 * standard_error?

Thanks

John
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David Winsemius, MD
West Hartford, CT

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