Dear all,
I want to use string split to parse column names, however, I am having
some errors that I don't understand.
I see a problem when I try to rbind the output from strsplit.
please let me know if I'm missing something obvious,
thanks,
alison
here are my commands:
>strsplit<-strsplit(as.character(Rumino_Reps_agreeWalign$geneid),"\\.")
>
Rumino_Reps_agreeWalignTR<-transform(Rumino_Reps_agreeWalign,taxid=do.call(rbind,
strsplit))
Warning message:
In function (..., deparse.level = 1) :
number of columns of result is not a multiple of vector length (arg 1)
here is my data:
> head(Rumino_Reps_agreeWalign)
geneid count_Conser count_NonCons count_ConsSubst
1 657313.locus_tag:RTO_08940 7 5 5
2 457412.251848018 1 4 3
3 657314.locus_tag:CK5_20630 2 4 1
4 657323.locus_tag:CK1_33060 1 0 1
5 657313.locus_tag:RTO_09690 3 0 3
6 471875.197297106 0 2 1
count_NCSubst
1 1
2 0
3 0
4 0
5 1
6 1
here are the results from strsplit:
> head(strsplit)
[[1]]
[1] "657313" "locus_tag:RTO_08940"
[[2]]
[1] "457412" "251848018"
[[3]]
[1] "657314" "locus_tag:CK5_20630"
[[4]]
[1] "657323" "locus_tag:CK1_33060"
[[5]]
[1] "657313" "locus_tag:RTO_09690"
[[6]]
[1] "471875" "197297106"
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