On 25.04.2012 17:12, Steve Lianoglou wrote: > Check out the vignette for the optparse library: > > http://cran.r-project.org/web/packages/optparse/vignettes/optparse.pdf > > Super helpful library if you plan on making any semi-interesting > command line scripts w/ R. > > -steve > > On Wed, Apr 25, 2012 at 6:47 AM, aoife doherty > <aoife.m.dohe...@gmail.com> wrote: >> Hey guys, >> Does anyone have an example of a REALLY simple shell script in R. >> >> Basically i want to run this command: >> >> library(MASS) >> wilcox.test(list1,list2,paired=TRUE,alternative=c("greater"),correct=TRUE,exact=FALSE) >> >> in a shell script something like this: >> >> #!/bin/bash >> R >> library(MASS) >> for i in *.out >> do >> wilcox.test($i,${i/out}.out2,paired=TRUE) >> $i.out >> done >> >> >> that i can run on a command line this this: >> sh R.sh >> >> >> because i've SO many files to run this command on. >> >> >> I've been googling, but i'm having trouble of just finding a simple example >> explaining how to make this shell script. >> >> Any help appreciated :) >> Aoife >> >> [[alternative HTML version deleted]] >> >> ______________________________________________ >> R-help@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. > > Hi Aoife you can use the capture.output function if you want so sent R output to a file
Regards! -- GnuPG Key:7340821E <http://pgp.mit.edu:11371/pks/lookup?search=0x7340821e&op=index&fingerprint=on> [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
