Dear all,
I was willing to use the library "rgl" to plot some 3D graphics, but
unfortunately, I wan't able to instal the library. The error message is below.
I would be very grateful if you could give me any clues about how I can solve
this.
Below you will find :
- installation from binaries
- installation from sources
- sessionInfo()
Bests,
--
Guillaume Meurice - PhD
Plateforme de Bioinformatique
Here is the installation from binaries :
=======================
> install.packages("rgl")
trying URL
'http://mirror.ibcp.fr/pub/CRAN/bin/macosx/leopard/contrib/2.15/rgl_0.92.892.tgz'
Content type 'application/x-gzip' length 7774197 bytes (7.4 Mb)
opened URL
==================================================
downloaded 7.4 Mb
The downloaded binary packages are in
/var/folders/20/20puJrE0FrWErlnMP5nP6E+++TI/-Tmp-//RtmplpCNL5/downloaded_packages
> library(rgl)
Error in get(Info[i, 1], envir = env) :
internal error -3 in R_decompress1
Error: package/namespace load failed for rgl
=======================
Here is the installation from sources :
=======================
> install.packages("rgl", type="source")
trying URL 'http://mirror.ibcp.fr/pub/CRAN/src/contrib/rgl_0.92.892.tar.gz'
Content type 'application/x-gzip' length 1713881 bytes (1.6 Mb)
opened URL
==================================================
downloaded 1.6 Mb
=================================================
Setting G.Meurice environment for useful day work
### Sourcing some useful stuff
- ugf.exp.utils.IO.R
- cqFea4CGH.R
- cqFea4GE.R
- cqFea4miRNA.R
- cqFea4CH3.R
Loading required package: snow
Loading required package: utils
### Defining Global Variables
- dir.arraydesign : directory to agilent array design
- dir.svn : directory to local svn repository
### Hooooooooommmmmmmmm
It's interesting that SAS Institute feels that non-peer-reviewed software with
hidden implementations of analytic methods that cannot be reproduced by others
should be trusted when building aircraft engines.
-- Frank Harrell (in response to the statement of the SAS director of
technology product marketing: "We have customers who build engines for
aircraft. I am happy they are not using freeware when I get on a jet.")
R-help (January 2009)
Now it's time to work
=================================================
* installing *source* package rgl ...
** package rgl successfully unpacked and MD5 sums checked
checking for gcc... gcc -arch x86_64 -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... checking whether we are cross
compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch x86_64 -std=gnu99 accepts -g... yes
checking for gcc -arch x86_64 -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -arch x86_64 -std=gnu99 -E
checking for gcc... (cached) gcc -arch x86_64 -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc -arch x86_64 -std=gnu99 accepts -g... (cached) yes
checking for gcc -arch x86_64 -std=gnu99 option to accept ISO C89... (cached)
none needed
checking for libpng-config... no
checking libpng... checking for grep that handles long lines and -e...
/usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking png.h usability... no
checking png.h presence... no
checking for png.h... no
checking for png_read_update_info in -lpng... no
configure: libpng header and lib found
configure: using libpng dynamic linkage
checking for X... libraries /usr/X11/lib, headers
checking for glEnd in -lGL... yes
checking for gluProject in -lGLU... yes
checking for freetype-config... no
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - x86_64
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c ABCLineSet.cpp -o ABCLineSet.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c BBoxDeco.cpp -o BBoxDeco.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c Background.cpp -o Background.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c Color.cpp -o Color.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c Disposable.cpp -o Disposable.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c Light.cpp -o Light.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c LineSet.cpp -o LineSet.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c LineStripSet.cpp -o LineStripSet.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c Material.cpp -o Material.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c PlaneSet.cpp -o PlaneSet.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c PointSet.cpp -o PointSet.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c PrimitiveSet.cpp -o PrimitiveSet.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c QuadSet.cpp -o QuadSet.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c RenderContext.cpp -o RenderContext.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c Shape.cpp -o Shape.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c SphereMesh.cpp -o SphereMesh.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c SphereSet.cpp -o SphereSet.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c SpriteSet.cpp -o SpriteSet.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c String.cpp -o String.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c Surface.cpp -o Surface.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c TextSet.cpp -o TextSet.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c Texture.cpp -o Texture.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c Viewpoint.cpp -o Viewpoint.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c api.cpp -o api.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c assert.cpp -o assert.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c callbacks.cpp -o callbacks.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c device.cpp -o device.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c devicemanager.cpp -o devicemanager.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c fps.cpp -o fps.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c ftgl.cpp -o ftgl.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c geom.cpp -o geom.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -fPIC -g -O2
-c gl2ps.c -o gl2ps.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c glErrors.cpp -o glErrors.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c glgui.cpp -o glgui.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c gui.cpp -o gui.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c init.cpp -o init.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c par3d.cpp -o par3d.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c pixmap.cpp -o pixmap.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c render.cpp -o render.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c rglmath.cpp -o rglmath.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c rglview.cpp -o rglview.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c scene.cpp -o scene.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c select.cpp -o select.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c win32gui.cpp -o win32gui.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c win32lib.cpp -o win32lib.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c x11gui.cpp -o x11gui.o
x11gui.cpp: In constructor gui::X11GUIFactory::X11GUIFactory(const char*):
x11gui.cpp:468: warning: deprecated conversion from string constant to char*
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
-DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2 -fPIC
-g -O2 -c x11lib.cpp -o x11lib.o
g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined
dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o
rgl.so ABCLineSet.o BBoxDeco.o Background.o Color.o Disposable.o Light.o
LineSet.o LineStripSet.o Material.o PlaneSet.o PointSet.o PrimitiveSet.o
QuadSet.o RenderContext.o Shape.o SphereMesh.o SphereSet.o SpriteSet.o String.o
Surface.o TextSet.o Texture.o Viewpoint.o api.o assert.o callbacks.o device.o
devicemanager.o fps.o ftgl.o geom.o gl2ps.o glErrors.o glgui.o gui.o init.o
par3d.o pixmap.o render.o rglmath.o rglview.o scene.o select.o win32gui.o
win32lib.o x11gui.o x11lib.o -lGLU -lGL -framework OpenGL -dylib_file
/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
-lpng -L/usr/X11/lib -lX11 -F/Library/Frameworks/R.framework/.. -framework R
-Wl,-framework -Wl,CoreFoundation
mkdir Temp
mv x11*.o Temp
mkdir -p AGL
mv AGL/* .
MAKINGAGL=TRUE /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB -o
aglrgl.so *.cpp *.c \
osx/*.mm osx/*.cpp
mv: rename AGL/* to ./*: No such file or directory
make: [aglrgl.so] Error 1 (ignored)
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-DHAVE_PNG_H -DRGL_USE_COCOA -Iext -I/usr/local/include -g -O2 -fPIC -g -O2
-c x11gui.cpp -o x11gui.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-DHAVE_PNG_H -DRGL_USE_COCOA -Iext -I/usr/local/include -g -O2 -fPIC -g -O2
-c x11lib.cpp -o x11lib.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
-DHAVE_PNG_H -DRGL_USE_COCOA -Iext -I/usr/local/include -fPIC -c
osx/osxgui.mm -o osx/osxgui.o
osx/osxgui.mm:9:2: error: #error Cocoa backend reguires FreeType font reneder
make[1]: *** [osx/osxgui.o] Error 1
make: *** [aglrgl.so] Error 1
ERROR: compilation failed for package rgl
* removing /Library/Frameworks/R.framework/Versions/2.15/Resources/library/rgl
* restoring previous
/Library/Frameworks/R.framework/Versions/2.15/Resources/library/rgl
The downloaded source packages are in
/private/var/folders/20/20puJrE0FrWErlnMP5nP6E+++TI/-Tmp-/RtmplpCNL5/downloaded_packages
Warning message:
In install.packages("rgl", type = "source") :
installation of package rgl had non-zero exit status
=======================
> sessionInfo()
R version 2.15.1 (2012-06-22)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] splines stats graphics grDevices datasets utils methods base
other attached packages:
[1] plotrix_3.4-2 RColorBrewer_1.0-5 mclust_3.4.11
multicore_0.1-7 LVSmiRNA_1.6.0
[6] vsn_3.24.0 affy_1.34.0 MASS_7.3-19
quantreg_4.81 SparseM_0.96
[11] Biobase_2.16.0 BiocGenerics_0.2.0 pvclust_1.2-2
arrayQualityMetrics_3.12.0 impute_1.30.0
[16] marray_1.34.0 limma_3.12.1 fortunes_1.5-0
snowfall_1.84 snow_0.3-9
loaded via a namespace (and not attached):
[1] affyio_1.24.0 affyPLM_1.32.0 annotate_1.34.1
AnnotationDbi_1.18.1 beadarray_2.6.0 BeadDataPackR_1.8.0
[7] BiocInstaller_1.4.7 Biostrings_2.24.1 Cairo_1.5-1
cluster_1.14.2 colorspace_1.1-1 DBI_0.2-5
[13] genefilter_1.38.0 grid_2.15.1 Hmisc_3.9-3
hwriter_1.3 IRanges_1.14.4 KernSmooth_2.23-8
[19] lattice_0.20-6 latticeExtra_0.6-19 plyr_1.7.1
preprocessCore_1.18.0 reshape2_1.2.1 RSQLite_0.11.1
[25] setRNG_2011.11-2 stats4_2.15.1 stringr_0.6
survival_2.36-14 SVGAnnotation_0.93-1 tools_2.15.1
[31] XML_3.9-4 xtable_1.7-0 zlibbioc_1.2.0
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