I'm trying to use sqdf's function read.csv.sql to read CSV files in which the
missing values are represented by NA's.
Plain old read.csv works fine on these files, but they are rather large and I'd
like to filter using sql-like statements.
However, even if I specify field.types correctly and nrows=-1, it still turns
the columns with NA's into chars or 0.
I'm trying to make this OS independent, so I don't think I can use a filter to
convert the NA's to NULL's or whatever SQLite would understand.
I can accept it everything has to be read in as char and then convert to
doubles with as.numeric, but I'm looking for speed.
Here is code I thought would read the file (I've attached a small sample.)
It almost works if there are no NA's in the initial rows, but it still turns
NA's into 0's instead of NA or something I can change into NA;
and it returns characters if there are NA's in the initial rows.
(0 is a possible value so I can't filter out the 0's.)
field.types <- list(V1='char', V2='char', V3='real', V4='int', V5='real',
V6='int', V7='real')
dtst <- read.csv.sql("./tmp.csv", header=FALSE, field.types=field.types,
nrows=-1)
str(dtst)
'data.frame': 32 obs. of 7 variables:
$ V1: chr "2012-07-01" "2012-07-01" "2012-07-01" "2012-07-01" ...
$ V2: chr "15:50:00" "15:51:00" "15:52:00" "15:53:00" ...
$ V3: chr "NA" "NA" "NA" "NA" ...
$ V4: int 0 0 0 0 0 0 0 0 0 0 ...
$ V5: chr "NA" "NA" "NA" "NA" ...
$ V6: int 0 0 0 0 0 0 0 0 0 0 ...
$ V7: chr "NA" "NA" "NA" "NA" ...
Any suggestions?
Thanks,
-- David L. Reiner
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