Thank you all including Bert,In my opinion the library() when is working in cygwin env., does not check the additional libraries, where R installed the additional packages.
So the solution for this problem was to define manually in my programs where is located the library of additional packages: (although I was expecting library() itself to know about the additional packages
library('rgenoud',lib.loc='C:/Users/aldi/Documents/R/win-library/2.15')
This solved the problem. Now R works again in cygwin. :-)
Thanks,
Aldi
On 10/16/2012 1:19 PM, Bert Gunter wrote:
I do not think that this has anything to do with the issue at hand, but just to clarify ... On Tue, Oct 16, 2012 at 10:18 AM, Jeff Newmiller <jdnew...@dcn.davis.ca.us> wrote:Probably because when you run it from Cygwin the R_LIBS variable does not point to the user and install library directories. I don't know how Rgui knows where they are (registry?)R for Windows need not use the registry at all, and does so optionally for just a couple of minor issues. See the R for WIndows FAQ 2.17 for details. ?library ?.libPaths describe how R sets/gets library paths (including defaults). Cheers, Bertbut you can look in the .Library and .Library.site variables to see the results.In a case like this, posting your sessionInfo() for each case is highly recommended. --------------------------------------------------------------------------- Jeff Newmiller The ..... ..... Go Live... DCN:<jdnew...@dcn.davis.ca.us> Basics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO#.. Playing Research Engineer (Solar/Batteries O.O#. #.O#. with /Software/Embedded Controllers) .OO#. .OO#. rocks...1k --------------------------------------------------------------------------- Sent from my phone. Please excuse my brevity. Aldi Kraja <a...@wustl.edu> wrote:Hi, Using R 2.15.1 on Windows 7. Have installed both versions 32 and 64bit. In both of them among others I have installed a package rgenoud When I open R gui of 32bit and write library(rgenoud) it responds by showing a functional rgenoud version 5.7-8. The same it does on Rgui 64bit. Now I am working in cygwin (v. 1.12.4.0) with xwin. Normally before when I had installed a package, I only had to call the library with the name of the package and R will find the right one to load. Now when I apply R CMD BATCH script1.R out1.txt, under cygwin the first thing it reports: R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" After some generalities it reportslibrary(rgenoud)Error in library(rgenoud) : there is no package called 'rgenoud' Execution halted So my question is why under cygwin in a batch mode, it does not find the installed package, which is already installed in my laptop's R? Thank you in advance, Aldi
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