Hi, Yihui,
Attached is an HTML Diff report of the two files. The left pane contains the
R-2.15.0 file.
Thanks.
--Mark
________________________________
From: Yihui Xie <x...@yihui.name>
To: Mark Lamias <mlam...@yahoo.com>
Cc: "r-help@r-project.org" <r-help@r-project.org>
Sent: Thursday, November 29, 2012 2:43 PM
Subject: Re: [R] knitr error with Lyx
That is very helpful! Just to continue debugging, can you save the two
versions of the tex files produced from LyX with different versions of
R and do a diff on them? It sounds like something has changed from R
2.15.0 to 2.15.2.
Regards,
Yihui
--
Yihui Xie <xieyi...@gmail.com>
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Thu, Nov 29, 2012 at 1:26 PM, Mark Lamias <mlam...@yahoo.com> wrote:
> Thanks, Yihui!
>
> Luckily I kept R-2.15.0 and left it untouched (so I can continue to use that
> for now). If it helps any, I was able to go back into Lyx and change the
> path to point to R-2.15.0 and I also changed the windows path environment
> variable to point to the old version. After doing this, LyX worked fine
> with no problem on the code below. Changing the paths back to the new
> version R-2.15.2, generates the error below.
>
> If anyone else has any idea how to resolve this, either through R or a
> Lyx/LaTeX fix, I'd be all ears.
>
> Thanks, again for your response, Yihui!
>
>
> Sincerely yours,
>
> Mark J. Lamias
C:\Users\Mark\Desktop\Test\2.15.0.tex C:\Users\Mark\Desktop\Test\2.15.2.tex
\batchmode \batchmode
\makeatletter \makeatletter
\def\input@path{{C:/Users/Mark/Desktop//}}
\def\input@path{{C:/Users/Mark/Desktop//}}
\makeatother \makeatother
\documentclass{article} \documentclass{article}\usepackage{graphicx,
color}
\usepackage{graphicx, color} %% maxwidth is the original width if it is
less than linewidth
%% otherwise use linewidth (to make sure the graphics do not exceed the
margin)
\makeatletter
\def\maxwidth{ %
\ifdim\Gin@nat@width>\linewidth
\linewidth
\else
\Gin@nat@width
\fi
}
\makeatother
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\newcommand{\hlcom}[1]{\textcolor[rgb]{0.51,0.51,0.51}{\it{#1}}}
\newcommand{\hldir}[1]{\textcolor[rgb]{0,0.51,0}{#1}}
\newcommand{\hlsym}[1]{\textcolor[rgb]{0,0,0}{#1}}
\newcommand{\hlline}[1]{\textcolor[rgb]{0.33,0.33,0.33}{#1}}
\newcommand{\hlkwa}[1]{\textcolor[rgb]{0,0,0}{\bf{#1}}}
\newcommand{\hlkwb}[1]{\textcolor[rgb]{0.51,0,0}{#1}}
\newcommand{\hlkwc}[1]{\textcolor[rgb]{0,0,0}{\bf{#1}}}
\newcommand{\hlkwd}[1]{\textcolor[rgb]{0,0,0.51}{#1}}
\definecolor{fgcolor}{rgb}{0,0,0}
\usepackage{framed} \usepackage{framed}
\makeatletter \makeatletter
\newenvironment{kframe}{% \newenvironment{kframe}{%
\def\at@end@of@kframe{}%
\ifinner\ifhmode%
\def\at@end@of@kframe{\end{minipage}}%
\begin{minipage}{\columnwidth}%
\fi\fi%
\def\FrameCommand##1{\hskip\@totalleftmargin \hskip-\fboxsep
\def\FrameCommand##1{\hskip\@totalleftmargin \hskip-\fboxsep
\colorbox{shadecolor}{##1}\hskip-\fboxsep
\colorbox{shadecolor}{##1}\hskip-\fboxsep
% There is no \@totalrightmargin, so: % There is no
\\@totalrightmargin, so:
\hskip-\linewidth \hskip-\@totalleftmargin \hskip\columnwidth}%
\hskip-\linewidth \hskip-\@totalleftmargin \hskip\columnwidth}%
\MakeFramed {\advance\hsize-\width \MakeFramed {\advance\hsize-\width
\@totalleftmargin\z@ \linewidth\hsize \@totalleftmargin\z@
\linewidth\hsize
\@setminipage}}% \@setminipage}}%
{\par\unskip\endMakeFramed} {\par\unskip\endMakeFramed%
\at@end@of@kframe}
\makeatother \makeatother
\definecolor{shadecolor}{rgb}{.97, .97, .97}
\definecolor{shadecolor}{rgb}{.97, .97, .97}
\definecolor{messagecolor}{rgb}{0, 0, 0}
\definecolor{warningcolor}{rgb}{1, 0, 1}
\definecolor{errorcolor}{rgb}{1, 0, 0}
\newenvironment{knitrout}{}{} % an empty environment to be redefined in TeX
\newenvironment{knitrout}{}{} % an empty environment to be redefined in TeX
\newcommand{\SweaveOpts}[1]{} % do not interfere with LaTeX
\usepackage{alltt}
\newcommand{\SweaveInput}[1]{} % because they are not real TeX commands
\newcommand{\Sexpr}[1]{} % will only be parsed by R
\usepackage[T1]{fontenc} \usepackage[T1]{fontenc}
\usepackage[latin9]{inputenc} \usepackage[latin9]{inputenc}
\usepackage{fancyhdr} \usepackage{fancyhdr}
\pagestyle{fancy} \pagestyle{fancy}
\setcounter{secnumdepth}{0} \setcounter{secnumdepth}{0}
\usepackage{amsmath} \usepackage{amsmath}
\usepackage{amssymb} \usepackage{amssymb}
\begin{document} \begin{document}
\begin{knitrout} \begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969,
0.969}\color{fgcolor}\begin{kframe}\definecolor{shadecolor}{rgb}{0.969,
0.969, 0.969}\color{fgcolor}\begin{kframe}
\begin{flushleft} \begin{alltt}
\ttfamily\noindent \hlcomment{# Read in data}
\hlcomment{\usebox{\hlnormalsizeboxhash}{\ }Read{\ }in{\
}data}\hspace*{\fill}\\ y = \hlfunctioncall{c}(67, 73, 83, 89, 65, 91, 87,
86, 155, 127, 147, 212, 108, 100, 90, 153,
\hlstd{}\hlsymbol{y}{\ }\hlassignement{=}{\
}\hlfunctioncall{c}\hlkeyword{(}\hlnumber{67}\hlkeyword{,}{\
}\hlnumber{73}\hlkeyword{,}{\ }\hlnumber{83}\hlkeyword{,}{\
}\hlnumber{89}\hlkeyword{,}{\ }\hlnumber{65}\hlkeyword{,}{\
}\hlnumber{91}\hlkeyword{,}{\ }\hlnumber{87}\hlkeyword{,}{\
}\hlnumber{86}\hlkeyword{,}{\ }\hlnumber{155}\hlkeyword{,}{\
}\hlnumber{127}\hlkeyword{,}{\ }\hlnumber{147}\hlkeyword{,}{\
}\hlnumber{212}\hlkeyword{,}{\ }\hlnumber{108}\hlkeyword{,}{\
}\hlnumber{100}\hlkeyword{,}\hspace*{\fill}\\ 140, 142, 121, 150, 33, 8,
46, 54)
\hlstd{}{\ }{\ }{\ }{\ }\hlnumber{90}\hlkeyword{,}{\
}\hlnumber{153}\hlkeyword{,}{\ }\hlnumber{140}\hlkeyword{,}{\
}\hlnumber{142}\hlkeyword{,}{\ }\hlnumber{121}\hlkeyword{,}{\
}\hlnumber{150}\hlkeyword{,}{\ }\hlnumber{33}\hlkeyword{,}{\
}\hlnumber{8}\hlkeyword{,}{\ }\hlnumber{46}\hlkeyword{,}{\
}\hlnumber{54}\hlkeyword{)}\hspace*{\fill}\\ temp =
\hlfunctioncall{as.factor}(\hlfunctioncall{c}(\hlfunctionca
ll{rep}(\hlfunctioncall{seq}(360, 380, 10), each = 4),
\hlfunctioncall{rep}(\hlfunctioncall{seq}(380, 360, -10),
\hlstd{}\hlsymbol{temp}{\ }\hlassignement{=}{\
}\hlfunctioncall{as.factor}\hlkeyword{(}\hlfunctioncall{c}\
hlkeyword{(}\hlfunctioncall{rep}\hlkeyword{(}\hlfunctioncal
l{seq}\hlkeyword{(}\hlnumber{360}\hlkeyword{,}{\
}\hlnumber{380}\hlkeyword{,}{\}\hlnumber{10}\hlkeyword{)}\hlkeyword{,}{\
}\hlargument{each}{\ }\hlargument{=}{\
}\hlnumber{4}\hlkeyword{)}\hlkeyword{,}{\
}\hlfunctioncall{rep}\hlkeyword{(}\hlfunctioncall{seq}\hlke
yword{(}\hlnumber{380}\hlkeyword{,}\hspace*{\fill}\\ each = 4)))
\hlstd{}{\ }{\ }{\ }{\ }\hlnumber{360}\hlkeyword{,}{\
}\hlkeyword{-}\hlnumber{10}\hlkeyword{)}\hlkeyword{,}{\}\hlargument{each}{\
}\hlargument{=}{\
}\hlnumber{4}\hlkeyword{)}\hlkeyword{)}\hlkeyword{)}\hspace*{\fill}\\coat
=\hlfunctioncall{as.factor}(\hlfunctioncall{rep}(\hlfunctioncall{seq}(1,
4), 6))
\hlstd{}\hlsymbol{coat}{\ }\hlassignement{=}{\
}\hlfunctioncall{as.factor}\hlkeyword{(}\hlfunctioncall{rep
}\hlkeyword{(}\hlfunctioncall{seq}\hlkeyword{(}\hlnumber{1}\hlkeyword{,}{\
}\hlnumber{4}\hlkeyword{)}\hlkeyword{,}{\
}\hlnumber{6}\hlkeyword{)}\hlkeyword{)}\hspace*{\fill}\\ replicate =
\hlfunctioncall{as.factor}(\hlfunctioncall{rep}(\hlfunctioncall{seq}(1,6),
each = 4))
\hlstd{}\hlsymbol{replicate}{\ }\hlassignement{=}{\
}\hlfunctioncall{as.factor}\hlkeyword{(}\hlfunctioncall{rep
}\hlkeyword{(}\hlfunctioncall{seq}\hlkeyword{(}\hlnumber{1}\hlkeyword{,}{\
}\hlnumber{6}\hlkeyword{)}\hlkeyword{,}{\ }\hlargument{each}{\
}\hlargument{=}{\}\hlnumber{4}\hlkeyword{)}\hlkeyword{)}\hspace*{\fill}\\
\hlcomment{# Obtain Factorial/Incorrect Model}
\hlstd{}\hlcomment{\usebox{\hlnormalsizeboxhash}{\ }Obtain{\
}Factorial/Incorrect{\ }Model}\hspace*{\fill}\\ o = \hlfunctioncall{lm}(y ~
temp * coat)
\hlstd{}\hlsymbol{o}{\ }\hlassignement{=}{\
}\hlfunctioncall{lm}\hlkeyword{(}\hlsymbol{y}{\}\hlkeyword{\urltilda{}}{\
}\hlsymbol{temp}{\ }\hlkeyword{*}{\
}\hlsymbol{coat}\hlkeyword{)}\hspace*{\fill}\\ ano =
\hlfunctioncall{anova}(o)
\hlstd{}\hlsymbol{ano}{\ }\hlassignement{=}{\
}\hlfunctioncall{anova}\hlkeyword{(}\hlsymbol{o}\hlkeyword{
)}\hspace*{\fill}\\ ano
\hlstd{}\hlsymbol{ano}\mbox{} \end{alltt}
\normalfont
\end{flushleft}
\begin{verbatim} \begin{verbatim}
## Analysis of Variance Table ## Analysis of Variance Table
## ##
## Response: y ## Response: y
## Df Sum Sq Mean Sq F value Pr(>F) ## Df Sum Sq
Mean Sq F value Pr(>F)
## temp 2 26519 13260 10.23 0.0026 ** ## temp 2 26519
13260 10.23 0.0026 **
## coat 3 4289 1430 1.10 0.3860 ## coat 3 4289
1430 1.10 0.3860
## temp:coat 6 3270 545 0.42 0.8518 ## temp:coat 6 3270
545 0.42 0.8518
## Residuals 12 15560 1297 ## Residuals 12 15560
1297
## --- ## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 ##
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
\end{verbatim} \end{verbatim}
\end{kframe} \end{kframe}
\end{knitrout} \end{knitrout}
\end{document} \end{document}
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