On 12-12-15 10:10 AM, Yong Wang wrote:
Dear list;How can I speed up the run of following code (illustrative) #======================================================================== con<-vector("numeric") for (i in 1:limit) { if(matched data for the ith item found) { if(i==1) {con<-RowOfMatchedData } else {con<-rbind(con,matchedData)} } } #======================================================================== each RowOfMatchedData contains 105 variables, when "i" runs over 10^7 and the data container "con" get large enough, the codes get extremely slow, I know this is a working memory problem (2GB only), is there anyway to circumvent this problem without dicing and slicing the data.
You are reallocating and copying con in every step in your loop. Preallocate it and just assign new data into the appropriate row and things will be much faster.
Duncan Murdoch ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
