Le 02/01/13 17:38, Uwe Ligges a écrit :
On 02.01.2013 17:28, Marc Girondot wrote:
Le 02/01/13 16:03, Uwe Ligges a écrit :
On 02.01.2013 11:58, Marc Girondot wrote:
I use R 2.15.2 on MacosX 10.8.2
I have a problem checking for a package that I want to submit in CRAN.
When I check like that, no problem or warning are detected.
system("R CMD check '[path]/phenology'")
I create the .tar.gz package with that. The file phenology_3.43.tar.gz
is generated. I can install the package and it works.
system("R CMD build '[path]/phenology'")
But if I check it using --as-cran as required by CRAN policy,
system("R CMD check '[path]/phenology_3.43.tar.gz' --as-cran")
I get an error:
* using log directory ‘[path]/Phenology Package/phenology.Rcheck’
* using R version 2.15.2 (2012-10-26)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* checking for file ‘phenology/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘phenology’ version ‘3.43’
* checking CRAN incoming feasibility ... OK
Maintainer: ‘Marc Girondot <marc.giron...@u-psud.fr>’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking whether package ‘phenology’ can be installed ... ERROR
Installation failed.
See ‘[path]/phenology.Rcheck/00install.out’ for details.
The file 00install.out has no more information, it is just a copy of
these informations.
I would like to know if there is a "verbose" version of the check.
Well, the "verbos"e part is in file
[path]/phenology.Rcheck/00install.out
as the ERROR message told you.
Best,
Uwe Ligges
Thanks... I had read this file but then the "verbose" message is
obscure !
Any idea ?
Thanks
Marc
* installing *source* package ‘phenology’ ...
** R
** data
** moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
*** arch - i386
sh: de: command not found
Oh, sh fails saying that some shell command "de" was not found that
was required when trying to load the package. Not sure if that is part
of the phenology startup?
Uwe
*** arch - x86_64
sh: de: command not found
ERREUR : loading failed for ‘i386’, ‘x86_64’
* removing ‘/Users/marcgirondot/Documents/Espace de travail
R/Phenology/Source fit/Phenology Package/phenology.Rcheck/phenology’
Dear Uwe,
I do not use this command de (no idea what is it !)
I try first to simplify at the maximum the package and I get the same error.
Then I check it on windows XP, R 2.15.2 and it works. No error.
Then it seems there is a bug in CMD check path/name --as-cran in the
MacosX version.
Thanks a lot for your help,
Marc
--
__________________________________________________________
Marc Girondot, Pr
Laboratoire Ecologie, Systématique et Evolution
Equipe de Conservation des Populations et des Communautés
CNRS, AgroParisTech et Université Paris-Sud 11 , UMR 8079
Bâtiment 362
91405 Orsay Cedex, France
Tel: 33 1 (0)1.69.15.72.30 Fax: 33 1 (0)1.69.15.73.53
e-mail: marc.giron...@u-psud.fr
Web: http://www.ese.u-psud.fr/epc/conservation/Marc.html
Skype: girondot
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