Hello Einat, Have you tried ggbio package's plotGrandLinear from bioconductor?
Best, -m On 8 January 2013 20:03, Einat Granot <einatgra...@gmail.com> wrote: > Hello, > I am trying to create a simple Manhattan plot for a small list of 200 SNPs > spread out in the genome in different genes. > I have tried different functions (using ggplot2 and a function created by > Stephen Turner, mhtplot etc.)-none of them work smoothly. > Does anyone have a simple way to create the plot (not for all 22 > chromosomes)- with the x axis showing the genes name and not the chromosomal > location. > Thanks a lot, > Einat > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
