Hi, I am new to bioconductor, trying to install KEGGSOAP package, but got warnings() when installing and error message when trying to load the package, can anyone suggest what went wrong?
many thanks John > source("http://bioconductor.org/biocLite.R") Bioconductor version 2.11 (BiocInstaller 1.8.3), ?biocLite for help > biocLite("KEGGSOAP") BioC_mirror: http://bioconductor.org Using Bioconductor version 2.11 (BiocInstaller 1.8.3), R version 2.15. Installing package(s) 'KEGGSOAP' trying URL 'http://bioconductor.org/packages/2.11/bioc/bin/windows/contrib/2.15/KEGGSOAP_1.32.0.zip' Content type 'application/zip' length 69037 bytes (67 Kb) opened URL downloaded 67 Kb package âKEGGSOAPâ successfully unpacked and MD5 sums checked The downloaded binary packages are in        C:\Users\yzhang\AppData\Local\Temp\RtmpawAjwx\downloaded_packages Warning message: installed directory not writable, cannot update packages 'acepack', 'actuar', 'ada', 'ade4', 'ade4TkGUI',  'agricolae', 'akima', 'ape', 'aplpack', 'arules', 'bitops', 'boot', 'Cairo', 'car', 'caTools', 'cba',  'chron', 'class', 'clue', 'cluster', 'coda', 'colorspace', 'CompQuadForm', 'corpcor', 'DAAG', 'date',  'deldir', 'descr', 'deSolve', 'devtools', 'digest', 'diptest', 'doBy', 'DoE.wrapper', 'e1071', 'effects',  'ENmisc', 'epiR', 'eRm', 'evaluate', 'evd', 'FactoMineR', 'fArma', 'fAssets', 'fBasics', 'fdrtool',  'fExoticOptions', 'fExtremes', 'fGarch', 'fields', 'flexclust', 'fMultivar', 'fNonlinear', 'fOptions',  'forecast', 'foreign', 'fpc', 'fracdiff', 'fRegression', 'FrF2', 'FrF2.catlg128', 'fTrading',  'fUnitRoots', 'gamlss', 'gamlss.data', 'gamlss.dist', 'gclus', 'gdata', 'geoR', 'GGally', 'ggm',  'ggplot2', 'gmodels', 'gridBase', 'gWidgets', 'gWidgetstcltk', 'HH', 'Hmisc', 'httr', 'igraph',  'igraph0', 'inline', 'ipred', 'isa2', 'JavaGD', 'JGR', 'kernlab', 'KernSmoot [... truncated] > library(KEGGSOAP) Loading required package: BiocGenerics Attaching package: âBiocGenericsâ The following object(s) are masked from âpackage:statsâ:    xtabs The following object(s) are masked from âpackage:baseâ:    anyDuplicated, cbind, colnames, duplicated, eval, Filter, Find, get, intersect, lapply, Map, mapply, mget, order, paste,    pmax, pmax.int, pmin, pmin.int, Position, rbind, Reduce, rep.int, rownames, sapply, setdiff, table, tapply, union, unique failed to load HTTP resource Error : .onLoad failed in loadNamespace() for 'KEGGSOAP', details:  call: NULL  error: 1: failed to load HTTP resource Error: package/namespace load failed for âKEGGSOAPâ > sessionInfo() R version 2.15.1 (2012-06-22) Platform: x86_64-pc-mingw32/x64 (64-bit) locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252  [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C                         [5] LC_TIME=English_United States.1252   attached base packages: [1] stats    graphics grDevices datasets utils    methods  base    other attached packages: [1] BiocGenerics_0.4.0 BiocInstaller_1.8.3 loaded via a namespace (and not attached): [1] codetools_0.2-8 RCurl_1.91-1.1 SSOAP_0.8-0    tools_2.15.1   XML_3.9-4.1    XMLSchema_0.7-2 [[alternative HTML version deleted]]
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