Duncan,
I know have two version of libcurl on my system, the Ubuntu installed 7.18.0
and my newly compiled from source 7.18.1 (which I installed after my
problems began with RCurl). I was afraid to uninstall 7.18.0 because
Synaptic wanted to uninstall half of my system if I did so via my package
manger. I must not have my PATH set up correctly because when I do curl
--version, I get:
curl 7.18.1 (x86_64-unknown-linux-gnu) libcurl/7.18.0 OpenSSL/0.9.8g zlib/
1.2.3.3 libidn/1.1
Protocols: tftp ftp telnet dict ldap ldaps http file https ftps
Features: GSS-Negotiate IDN IPv6 Largefile NTLM SSL libz
So curl is new and libcurl is a version older. This probably isn't ideal,
but may help us figure out what is going on because I ran nm against both
versions of libcurl....
for libcurl 7.18.1:
mkimpel-m90 /usr/local/lib: nm libcurl.so | grep Curl_base64_encode
0000000000009e30 T Curl_base64_encode
for libcurl 7.18.0
mkimpel-m90 /usr/lib: nm libcurl.so | grep Curl_base64_encode
nm: libcurl.so: no symbols
it looks like RCurl is still trying to link against 7.18.0, but, do I
interpret your comments to mean that, if I set up my PATH correctly so that
the newer version is found first, things might work?
Regardless, I hope this is somewhat diagnostic. If I have screwed up the
setup too much to make sense out of, perhaps one of the other guys with
problems could also furnish the info.
BTW, I did cc you on my post to R-help this evening (see below).
Thanks for your help and all your development efforts,
Mark
romMark Kimpel <[EMAIL PROTECTED]>toLoyal Goff <[EMAIL PROTECTED]>,
[EMAIL PROTECTED],
[EMAIL PROTECTED],
dateTue, May 6, 2008 at 9:18 PM
On Wed, May 7, 2008 at 12:43 AM, Duncan Temple Lang <[EMAIL PROTECTED]>
wrote:
> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA1
>
>
> Hi all
>
> ~ I'm glad this made it to R-help (or R-devel) so that I saw it
> as this is the sort of problem that should be at least CC'ed to the
> package maintainer.
>
> ~ Yes, there was a change to RCurl yesterday with one of the changes
> being to synchronize code between libcurl and RCurl regarding base64
> encoding
> which was causing a segfault with recent versions of libcurl.
>
> ~ The latest RCurl does not include the code for the Curl_base64_encode
> which was in the curl_base64.c file. The intent was to link against
> the on in libcurl, but what your reports suggest is that one some
> systems this is not available from libcurl.so. Can you confirm this with
> the nm output from libcurl.so
>
> ~ nm libcurl.so | grep Curl_base64_encode
>
> Precisely where libcurl.so (or libcurl.so.<digit>...) will vary,
> but it is probably in /usr/local/lib/ and you can see
> by using
>
> ~ curl-config --libs
> and seeing if there is -L<directory/path> in the output which will
> tell you where it is likely to be.
>
> If the symbol (Curl_base64_encode) is not there, there will be no output!
>
>
> ~ If that is the case, we will have to back to having our own copy
> of that routine and so we will end up with two versions - one for
> the old and one for the new and the configuration will endeavor to
> determine which is appropriate.
>
> ~ HTH
> ~ D.
>
>
> Mark Kimpel wrote:
> | Martin,
> |
> | Well, thanks for jumping in! We need all the help we can get ;)
> |
> | I changed the execute bit as you suggested and recompiled, no luck,
> still
> | the same error message.
> |
> | Below is the output you wanted me to look at, its a bit beyond me so I
> | include both a brief grep summary and then the whole enchilada. I do
> note
> | that my output is different from yours, but I'm not sure how to
> interpret.
> |
> | I also thought about removing curl from my system, but when starting to
> do
> | so with Synaptic, it looked like if I removed libcurl I would trash an
> awful
> | lot of my system. I did download and install the latest curl 7.18.1 on
> top
> | of the other one, put /usr/local/ to the start of my PATH, reinstalled
> | RCurl, and still the same erro message comes up.
> |
> | So, what does it mean that the output of nm is different on our systems
> and
> | is it important?
> |
> | Thanks, Mark
> |
> | mkimpel-m90 ~/bin/curl-7.18.1: nm
> | /home/mkimpel/R_HOME/site-library-2.7.0/RCurl/libs/RCurl.so | grep
> | base64_encode
> | U Curl_base64_encode
> | 0000000000003910 T R_base64_encode
> | mkimpel-m90 ~/bin/curl-7.18.1: nm
> | /home/mkimpel/R_HOME/site-library-2.7.0/RCurl/libs/RCurl.so | grep
> | Curl_base64_encode
> | U Curl_base64_encode
> | mkimpel-m90 ~/bin/curl-7.18.1: nm
> | /home/mkimpel/R_HOME/site-library-2.7.0/RCurl/libs/RCurl.so
> | U CDR
> | 0000000000208aa0 d CallEntries
> | 0000000000208c00 D CurlErrorNames
> | 000000000020aac0 D CurlInfoNames
> | 0000000000209740 D CurlOptionNames
> | U Curl_base64_decode
> | U Curl_base64_encode
> | U INTEGER
> | U LENGTH
> | U LOGICAL
> | 000000000020aee8 B OptionMemoryManager
> | U PRINTNAME
> | U RAW
> | 0000000000003f70 T RCreateNamesVec
> | 00000000002086a0 d RCurlErrorBuffer
> | 0000000000003fe0 T RCurlVersionInfoToR
> | 0000000000006d00 T RCurl_addMemoryAllocation
> | 0000000000006c90 T RCurl_addMemoryTicket
> | 0000000000006b50 T RCurl_getMemoryManager
> | 0000000000006b80 T RCurl_releaseManagerMemoryTickets
> | 0000000000006c70 T RCurl_releaseMemoryTickets
> | U REAL
> | U R_CHAR
> | U R_ClassSymbol
> | U R_ExternalPtrAddr
> | U R_ExternalPtrTag
> | U R_GlobalEnv
> | U R_MakeExternalPtr
> | U R_NaInt
> | U R_NamesSymbol
> | U R_NilValue
> | U R_PreserveObject
> | U R_RegisterCFinalizer
> | U R_ReleaseObject
> | U R_alloc
> | 0000000000003a90 T R_base64_decode
> | 0000000000003910 T R_base64_encode
> | 0000000000005060 T R_call_R_write_function
> | 0000000000003bc0 T R_check_bits
> | 00000000000047f0 T R_curlMultiPerform
> | 0000000000004db0 T R_curl_BinaryData_free
> | 0000000000004c90 T R_curl_BinaryData_new
> | 0000000000005380 T R_curl_BinaryData_to_raw
> | 0000000000004dd0 T R_curl_debug_callback
> | 0000000000006970 T R_curl_easy_duphandle
> | 0000000000005680 T R_curl_easy_getinfo
> | 00000000000069a0 T R_curl_easy_init
> | 0000000000006880 T R_curl_easy_perform
> | 00000000000060e0 T R_curl_easy_setopt
> | 0000000000005710 T R_curl_escape
> | 0000000000005440 T R_curl_getpasswd
> | 0000000000006950 T R_curl_global_cleanup
> | 0000000000006930 T R_curl_global_init
> | 0000000000004af0 T R_curl_progress_callback
> | 00000000000042f0 T R_curl_ssl_ctx_callback
> | 0000000000005c10 T R_curl_version
> | 0000000000005bf0 T R_curl_version_info
> | 0000000000005270 T R_curl_write_binary_data
> | 00000000000051b0 T R_curl_write_data
> | 00000000000051d0 T R_curl_write_header_data
> | U R_do_MAKE_CLASS
> | U R_do_new_object
> | U R_do_slot
> | U R_do_slot_assign
> | 0000000000004530 t R_finalizeCurlHandle
> | 0000000000006af0 T R_getCURLErrorEnum
> | 0000000000006b10 T R_getCURLInfoEnum
> | 0000000000006b30 T R_getCURLOptionEnum
> | 0000000000003ea0 T R_getCurlMultiHandle
> | 0000000000006a00 T R_init_RCurl
> | 0000000000003bf0 T R_internalWriteTest
> | 0000000000004a50 T R_popCurlMultiHandle
> | 0000000000006600 T R_post_form
> | 0000000000004aa0 T R_pushCurlMultiHandle
> | U R_registerRoutines
> | U R_tryEval
> | U R_useDynamicSymbols
> | 00000000000057e0 T Rcurl_set_header
> | U Rf_ScalarInteger
> | U Rf_ScalarReal
> | U Rf_ScalarString
> | U Rf_allocVector
> | U Rf_asInteger
> | U Rf_error
> | U Rf_eval
> | U Rf_getAttrib
> | U Rf_install
> | U Rf_length
> | U Rf_mkChar
> | U Rf_mkCharCE
> | U Rf_mkCharLen
> | U Rf_mkString
> | U Rf_protect
> | U Rf_setAttrib
> | U Rf_unprotect
> | U Rf_warning
> | U SETCAR
> | U SET_STRING_ELT
> | U SET_VECTOR_ELT
> | U STRING_ELT
> | U TYPEOF
> | U VECTOR_ELT
> | 0000000000208040 d VersionInfoFieldNames
> | 00000000002080c0 a _DYNAMIC
> | 0000000000208308 a _GLOBAL_OFFSET_TABLE_
> | w _Jv_RegisterClasses
> | 0000000000208008 d __CTOR_END__
> | 0000000000208000 d __CTOR_LIST__
> | 0000000000208018 d __DTOR_END__
> | 0000000000208010 d __DTOR_LIST__
> | 0000000000007e58 r __FRAME_END__
> | 0000000000208020 d __JCR_END__
> | 0000000000208020 d __JCR_LIST__
> | 000000000020aee0 A __bss_start
> | w __cxa_finalize@@GLIBC_2.2.5
> | 0000000000006e20 t __do_global_ctors_aux
> | 0000000000003890 t __do_global_dtors_aux
> | 0000000000208680 d __dso_handle
> | w __gmon_start__
> | U __stack_chk_fail@@GLIBC_2.4
> | U __strdup@@GLIBC_2.2.5
> | 000000000020aee0 A _edata
> | 000000000020aef0 A _end
> | 0000000000006e58 T _fini
> | 0000000000003188 T _init
> | 0000000000005c30 T addFormElement
> | 0000000000006050 T buildForm
> | 0000000000003870 t call_gmon_start
> | U calloc@@GLIBC_2.2.5
> | 0000000000004f90 T checkEncoding
> | 000000000020aee0 b completed.6183
> | 0000000000006a30 T createNamedEnum
> | U curl_easy_cleanup@@CURL_GNUTLS_3
> | U curl_easy_duphandle@@CURL_GNUTLS_3
> | U curl_easy_getinfo@@CURL_GNUTLS_3
> | U curl_easy_init@@CURL_GNUTLS_3
> | U curl_easy_perform@@CURL_GNUTLS_3
> | U curl_easy_setopt@@CURL_GNUTLS_3
> | U curl_easy_strerror@@CURL_GNUTLS_3
> | U curl_escape@@CURL_GNUTLS_3
> | U curl_formadd@@CURL_GNUTLS_3
> | U curl_formfree@@CURL_GNUTLS_3
> | U curl_free@@CURL_GNUTLS_3
> | U curl_global_cleanup@@CURL_GNUTLS_3
> | U curl_global_init@@CURL_GNUTLS_3
> | U curl_multi_add_handle@@CURL_GNUTLS_3
> | U curl_multi_fdset@@CURL_GNUTLS_3
> | U curl_multi_init@@CURL_GNUTLS_3
> | U curl_multi_perform@@CURL_GNUTLS_3
> | U curl_multi_remove_handle@@CURL_GNUTLS_3
> | U curl_slist_append@@CURL_GNUTLS_3
> | U curl_slist_free_all@@CURL_GNUTLS_3
> | U curl_unescape@@CURL_GNUTLS_3
> | U curl_version@@CURL_GNUTLS_3
> | U curl_version_info@@CURL_GNUTLS_3
> | U fprintf@@GLIBC_2.2.5
> | 00000000000038e0 t frame_dummy
> | U free@@GLIBC_2.2.5
> | 0000000000004590 T getBinaryDataFromR
> | 00000000000043f0 T getCURLPointerRObject
> | 00000000000053e0 T getCurlError
> | 0000000000005560 T getCurlInfoElement
> | 0000000000005900 T getCurlPointerForData
> | 0000000000003c40 T getMultiCURLPointerRObject
> | 0000000000003ec0 T getRStringsFromNullArray
> | 0000000000004190 T makeCURLPointerRObject
> | 00000000000047b0 T makeCURLcodeRObject
> | 0000000000003d80 T makeMultiCURLPointerRObject
> | U malloc@@GLIBC_2.2.5
> | U memcpy@@GLIBC_2.2.5
> | 00000000002080a0 d names.7400
> | 0000000000208688 d p.6181
> | U realloc@@GLIBC_2.2.5
> | U select@@GLIBC_2.2.5
> | U sprintf@@GLIBC_2.2.5
> | U stderr@@GLIBC_2.2.5
> | U strcpy@@GLIBC_2.2.5
> | U strlen@@GLIBC_2.2.5
> | U strncpy@@GLIBC_2.2.5
> | mkimpel-m90 ~/bin/curl-7.18.1:
> |
> |
> |
> |
> | On Tue, May 6, 2008 at 10:36 PM, Martin Morgan <[EMAIL PROTECTED]>
> wrote:
> |
> |> Hi Mark...
> |>
> |> A couple of shots in the dark, as no one else seems to be leaping in...
> |>
> |> The symbol Curl_base64_encode should be defined in
> |> /home/mkimpel/R_HOME/site-library-2.7.0/RCurl/libs/RCurl.so. What
> |> does
> |>
> |> nm /home/mkimpel/R_HOME/site-library-2.7.0/RCurl/libs/RCurl.so
> |>
> |> say? Mine says
> |>
> |> 0000000000003980 T Curl_base64_encode
> |>
> |> with the 'T' indicating that the symbol is defined (make sure nm spits
> |> out a bunch of lines before concluding that Curl_base64_encode is not
> |> defined).
> |>
> |> I retrieved the RCurl source, and one thing I notice is that
> |> RCurl/src/curl_base64.c has the 'execute' bit set, and perhaps a sane
> |> system would not compile it. Try
> |>
> |> % chmod -x RCurl/src/curl_base64.c
> |>
> |> and then
> |>
> |> % R CMD INSTALL RCurl
> |>
> |> Martin
> |>
> |> "Mark Kimpel" <[EMAIL PROTECTED]> writes:
> |>
> |>> I'm having same problem on Ubuntu 64-bit Hardy Heron. A bunch of
> |> security
> |>> patches from Ubuntu came out and I installed them today. After that
> was
> |> when
> |>> I first noted the problem (affycoretools, which I use all the time,
> |> won't
> |>> load). Below is my initial output, what follows is my reinstallation
> |> output
> |>> followed by the same error messages as obtained intially. I wonder if
> a
> |>> security patch has changed Curl? Or did RCurl just change? I have been
> |> using
> |>> R-2.7.0 since half-way through its develoment cycle and this is a new
> |>> problem for me.
> |>>
> |>> Mark
> |>>
> |>>> require(RCurl)
> |>> Loading required package: RCurl
> |>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
> |>> unable to load shared library
> |>> '/home/mkimpel/R_HOME/site-library-2.7.0/RCurl/libs/RCurl.so':
> |>> /home/mkimpel/R_HOME/site-library-2.7.0/RCurl/libs/RCurl.so:
> undefined
> |>> symbol: Curl_base64_encode
> |>>> install.packages("RCurl")
> |>>> sessionInfo()
> |>> R version 2.7.0 Patched (2008-05-04 r45620)
> |>> x86_64-unknown-linux-gnu
> |>>
> |>> locale:
> |>>
> |>
>
> LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
> |>> attached base packages:
> |>> [1] stats graphics grDevices utils datasets methods base
> |>>
> |>> other attached packages:
> |>> [1] graph_1.18.0
> |>>
> |>> loaded via a namespace (and not attached):
> |>> [1] cluster_1.11.10 tcltk_2.7.0 tools_2.7.0
> |>> mkimpel-m90 ~: R CMD INSTALL ~/Desktop/RCurl_0.9-1.tar.gz
> |>> Loading required package: methods
> |>> Loading required package: datasets
> |>> Loading required package: utils
> |>> Loading required package: grDevices
> |>> Loading required package: graphics
> |>> Loading required package: stats
> |>> Loading required package: graph
> |>> * Installing to library '/home/mkimpel/R_HOME/site-library-2.7.0'
> |>> * Installing *source* package 'RCurl' ...
> |>> checking for curl-config... /usr/bin/curl-config
> |>> checking for gcc... gcc
> |>> checking for C compiler default output file name... a.out
> |>> checking whether the C compiler works... yes
> |>> checking whether we are cross compiling... no
> |>> checking for suffix of executables...
> |>> checking for suffix of object files... o
> |>> checking whether we are using the GNU C compiler... yes
> |>> checking whether gcc accepts -g... yes
> |>> checking for gcc option to accept ANSI C... none needed
> |>> checking how to run the C preprocessor... gcc -E
> |>> Version has a libidn field
> |>> Using Curl_base64_encode with SessionHandle parameter.
> |>> configure: creating ./config.status
> |>> config.status: creating src/Makevars
> |>> ** libs
> |>> gcc -std=gnu99
> -I/home/mkimpel/R_HOME/R-patched/R-build/lib64/R/include
> |>> -DHAVE_LIBIDN_FIELD=1 -DBASE64_NEEDS_SESSION_DATA=1
> -I/usr/local/include
> |>> -fpic -g -O2 -c base64.c -o base64.o
> |>> base64.c: In function 'R_base64_decode':
> |>> base64.c:27: warning: implicit declaration of function
> |> 'Curl_base64_decode'
> |>> base64.c: In function 'R_base64_encode':
> |>> base64.c:64: warning: implicit declaration of function
> |> 'Curl_base64_encode'
> |>> gcc -std=gnu99
> -I/home/mkimpel/R_HOME/R-patched/R-build/lib64/R/include
> |>> -DHAVE_LIBIDN_FIELD=1 -DBASE64_NEEDS_SESSION_DATA=1
> -I/usr/local/include
> |>> -fpic -g -O2 -c curl_base64.c -o curl_base64.o
> |>> gcc -std=gnu99
> -I/home/mkimpel/R_HOME/R-patched/R-build/lib64/R/include
> |>> -DHAVE_LIBIDN_FIELD=1 -DBASE64_NEEDS_SESSION_DATA=1
> -I/usr/local/include
> |>> -fpic -g -O2 -c curl.c -o curl.o
> |>> curl.c: In function 'getRStringsFromNullArray':
> |>> curl.c:1104: warning: assignment discards qualifiers from pointer
> target
> |>> type
> |>> curl.c:1107: warning: assignment discards qualifiers from pointer
> target
> |>> type
> |>> gcc -std=gnu99
> -I/home/mkimpel/R_HOME/R-patched/R-build/lib64/R/include
> |>> -DHAVE_LIBIDN_FIELD=1 -DBASE64_NEEDS_SESSION_DATA=1
> -I/usr/local/include
> |>> -fpic -g -O2 -c curlInit.c -o curlInit.o
> |>> gcc -std=gnu99
> -I/home/mkimpel/R_HOME/R-patched/R-build/lib64/R/include
> |>> -DHAVE_LIBIDN_FIELD=1 -DBASE64_NEEDS_SESSION_DATA=1
> -I/usr/local/include
> |>> -fpic -g -O2 -c enums.c -o enums.o
> |>> gcc -std=gnu99
> -I/home/mkimpel/R_HOME/R-patched/R-build/lib64/R/include
> |>> -DHAVE_LIBIDN_FIELD=1 -DBASE64_NEEDS_SESSION_DATA=1
> -I/usr/local/include
> |>> -fpic -g -O2 -c memoryManagement.c -o memoryManagement.o
> |>> memoryManagement.c: In function 'RCurl_releaseManagerMemoryTickets':
> |>> memoryManagement.c:143: warning: passing argument 1 of 'free' discards
> |>> qualifiers from pointer target type
> |>> gcc -std=gnu99 -shared -L/usr/local/lib64 -o RCurl.so base64.o
> |> curl_base64.o
> |>> curl.o curlInit.o enums.o memoryManagement.o -lcurl -lgssapi_krb5
> |>> ** R
> |>> ** inst
> |>> ** preparing package for lazy loading
> |>> ** help
> |>> >>> Building/Updating help pages for package 'RCurl'
> |>> Formats: text html latex example
> |>> Note: removing empty section \examples
> |>> CURLHandle-class text html latex
> |>> Note: removing empty section \references
> |>> Note: removing empty section \seealso
> |>> Note: removing empty section \examples
> |>> CurlFeatureBits text html latex
> |>> Note: unmatched right brace in file 'MultiCURLHandle-class.Rd' on or
> |> after
> |>> line 28
> |>> Note: removing empty section \examples
> |>> MultiCURLHandle-class text html latex
> |>> RCurl-internal text html latex
> |>> Note: removing empty section \seealso
> |>> base64 text html latex example
> |>> basicHeaderGatherer text html latex example
> |>> basicTextGatherer text html latex example
> |>> Note: removing empty section \details
> |>> binaryBuffer text html latex example
> |>> chunkToLineReader text html latex example
> |>> Note: removing empty section \value
> |>> complete text html latex example
> |>> curlEscape text html latex example
> |>> curlGlobalInit text html latex example
> |>> curlOptions text html latex example
> |>> Note: unmatched right brace in file 'curlPerform.Rd' on or after line
> 18
> |>> Note: removing empty section \details
> |>> curlPerform text html latex example
> |>> Note: removing empty section \examples
> |>> curlSetOpt text html latex
> |>> Note: removing empty section \details
> |>> curlVersion text html latex example
> |>> Note: removing empty section \examples
> |>> fileUpload text html latex
> |>> findHTTPHeaderEncoding text html latex example
> |>> getBitIndicators text html latex example
> |>> Note: removing empty section \examples
> |>> getCurlHandle text html latex
> |>> getCurlInfo text html latex example
> |>> getURIAsynchronous text html latex example
> |>> Note: removing empty section \details
> |>> getURL text html latex example
> |>> merge.list text html latex example
> |>> postForm text html latex example
> |>> ** building package indices ...
> |>> * DONE (RCurl)
> |>> mkimpel-m90 ~: R
> |>>
> |>> R version 2.7.0 Patched (2008-05-04 r45620)
> |>> Copyright (C) 2008 The R Foundation for Statistical Computing
> |>> ISBN 3-900051-07-0
> |>>
> |>> R is free software and comes with ABSOLUTELY NO WARRANTY.
> |>> You are welcome to redistribute it under certain conditions.
> |>> Type 'license()' or 'licence()' for distribution details.
> |>>
> |>> Natural language support but running in an English locale
> |>>
> |>> R is a collaborative project with many contributors.
> |>> Type 'contributors()' for more information and
> |>> 'citation()' on how to cite R or R packages in publications.
> |>>
> |>> Type 'demo()' for some demos, 'help()' for on-line help, or
> |>> 'help.start()' for an HTML browser interface to help.
> |>> Type 'q()' to quit R.
> |>>
> |>> Loading required package: datasets
> |>> Loading required package: utils
> |>> Loading required package: grDevices
> |>> Loading required package: graphics
> |>> Loading required package: stats
> |>> Loading required package: graph
> |>> [1] "packages do not need updated"
> |>>> require(RCurl)
> |>> Loading required package: RCurl
> |>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
> |>> unable to load shared library
> |>> '/home/mkimpel/R_HOME/site-library-2.7.0/RCurl/libs/RCurl.so':
> |>> /home/mkimpel/R_HOME/site-library-2.7.0/RCurl/libs/RCurl.so:
> undefined
> |>> symbol: Curl_base64_encode
> |>>
> |>>
> |>> On Tue, May 6, 2008 at 7:49 AM, Loyal Goff <[EMAIL PROTECTED]>
> |> wrote:
> |>>> I am having a similar problem with RCurl after R2.7.0 although it
> does
> |> not
> |>>> appear to be 64-bit-related...
> |>>>
> |>>> On Mac OS X 10.5...
> |>>>
> |>>>> library(RCurl)
> |>>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
> |>>> unable to load shared library
> |>>>
> |>
> '/Library/Frameworks/R.framework/Resources/library/RCurl/libs/i386/RCurl.so':
> |>
>
> dlopen(/Library/Frameworks/R.framework/Resources/library/RCurl/libs/i386/RCurl.so,
> |>>> 6): Library not loaded:
> |>>> /Library/Frameworks/R.framework/Versions/2.6/Resources/lib/libR.dylib
> |>>> Referenced from:
> |>>>
> |>
> /Library/Frameworks/R.framework/Resources/library/RCurl/libs/i386/RCurl.so
> |>>> Reason: image not found
> |>>> Error: package/namespace load failed for 'RCurl'
> |>>>
> |>>>> sessionInfo()
> |>>> R version 2.7.0 (2008-04-22)
> |>>> i386-apple-darwin8.10.1
> |>>>
> |>>> locale:
> |>>> en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
> |>>>
> |>>> attached base packages:
> |>>> [1] stats graphics grDevices utils datasets methods base
> |>>>
> |>>>
> |>>>
> |>>> On May 6, 2008, at 5:48 AM, John Lande wrote:
> |>>>
> |>>> Dear All,
> |>>>> I have this problem with R-2.7.0 when loading RCurl on a 64 bit
> |> machine.
> |>>>> I am using a ubuntu 8.04.
> |>>>>
> |>>>> library(RCurl)
> |>>>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
> |>>>> unable to load shared library
> |>>>>
> |>
> '/home/john/R/x86_64-unknown-linux-gnu-library/2.7/RCurl/libs/RCurl.so':
> |> /home/john/R/x86_64-unknown-linux-gnu-library/2.7/RCurl/libs/RCurl.so:
> |>>>> undefined symbol: Curl_base64_encode
> |>>>> Error: package/namespace load failed for 'RCurl'
> |>>>>
> |>>>> what can i do?
> |>>>>
> |>>>> best
> |>>>>
> |>>>> session
> |>>>> sessionData sessionInfo
> |>>>>
> |>>>>> sessionInfo()
> |>>>>>
> |>>>> R version 2.7.0 (2008-04-22)
> |>>>> x86_64-unknown-linux-gnu
> |>>>>
> |>>>> locale:
> |>>>>
> |>>>>
> |>
>
> LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
> |>>>> attached base packages:
> |>>>> [1] stats graphics grDevices utils datasets methods base
> |>>>>
> |>>>> [[alternative HTML version deleted]]
> |>>>>
> |>>>> _______________________________________________
> |>>>> Bioconductor mailing list
> |>>>> [EMAIL PROTECTED]
> |>>>> https://stat.ethz.ch/mailman/listinfo/bioconductor
> |>>>> Search the archives:
> |>>>> http://news.gmane.org/gmane.science.biology.informatics.conductor
> |>>>>
> |>>> Loyal A. Goff, Ph.D.,
> |>>>
> |>>> Rutgers Stem Cell Research Center
> |>>> Rutgers: The State University of New Jersey
> |>>> Nelson Biology Labs D-251
> |>>> 604 Allison Rd,
> |>>> Piscataway, NJ 08854
> |>>> [EMAIL PROTECTED]
> |>>>
> |>>>
> |>>> _______________________________________________
> |>>> Bioconductor mailing list
> |>>> [EMAIL PROTECTED]
> |>>> https://stat.ethz.ch/mailman/listinfo/bioconductor
> |>>> Search the archives:
> |>>> http://news.gmane.org/gmane.science.biology.informatics.conductor
> |>>>
> |>>
> |>>
> |>> --
> |>> Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry
> |>> Indiana University School of Medicine
> |>>
> |>> 15032 Hunter Court, Westfield, IN 46074
> |>>
> |>> (317) 490-5129 Work, & Mobile & VoiceMail
> |>> (317) 663-0513 Home (no voice mail please)
> |>>
> |>> ******************************************************************
> |>>
> |>> [[alternative HTML version deleted]]
> |>>
> |>> _______________________________________________
> |>> Bioconductor mailing list
> |>> [EMAIL PROTECTED]
> |>> https://stat.ethz.ch/mailman/listinfo/bioconductor
> |>> Search the archives:
> |> http://news.gmane.org/gmane.science.biology.informatics.conductor
> |>
> |> --
> |> Martin Morgan
> |> Computational Biology / Fred Hutchinson Cancer Research Center
> |> 1100 Fairview Ave. N.
> |> PO Box 19024 Seattle, WA 98109
> |>
> |> Location: Arnold Building M2 B169
> |> Phone: (206) 667-2793
> |>
> |
> |
> |
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>
--
Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry
Indiana University School of Medicine
15032 Hunter Court, Westfield, IN 46074
(317) 490-5129 Work, & Mobile & VoiceMail
(317) 663-0513 Home (no voice mail please)
******************************************************************
[[alternative HTML version deleted]]
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