On 04/04/2013 10:18 AM, will.ea...@gmx.net wrote:
Dear all,I would like to fully document an analysis in R including script, output and workspace data. To do this I currently run under Linux $ R CMD BATCH myscript.R This command combines and saves only the script commands and the output ./myscript.Rout. To save the workspace, I have to explicitly specify the path in the R file and apply save.image(...). How can I save the full workspace with the same naming scheme under the same path, e.g. ./myscript.RData similar to ./myscript.Rout? Note: R CMD BATCH myscript.R --save does not work.
By default, R CMD BATCH runs R with --save, so it will save the image in the usual default place.
You can use commandArgs() in your script to find the name of the script, and construct a save image filename from that if you want to save somewhere else.
Duncan Murdoch ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
