[R] untar() error

[Hakim Abdi]

Dear List,

I have a list of 600+ *.gz files that I would like to extract and read the
geotiffs contained within them. I tried using the untar() function to
simplify this task but I am stumped by an error. I've combed the Internet
for a solution without luck. The details are below, and any help in solving
this matter is appreciated.

> files = list.files(path = "J:/GIMMS/NDVI", pattern = "data.tif.gz",
all.files = TRUE, full.names = TRUE, recursive = TRUE, ignore.case = TRUE,
include.dirs = TRUE)

> lapply(files, untar)
Error in rawToChar(block[seq_len(ns)]) :
  embedded nul in string: 'II*\0Ì <\001´
\0\0`G\0\0\fn\0\0¸”\0\0d»\0\0\020â\0\0¼\b\001\0h/\001\0\024V\001\0À|\001\0l£\001\0\030Ê\001\0Äð\001\0p\027\002\0\034>\002\0Èd\002\0t‹\002\0
²\002\0ÌØ\002\0xÿ\002\0$&\003\0ÐL\003\0|s\003'

> untar(files[1])
Error in rawToChar(block[seq_len(ns)]) :
  embedded nul in string: 'II*\0Ì <\001´
\0\0`G\0\0\fn\0\0¸”\0\0d»\0\0\020â\0\0¼\b\001\0h/\001\0\024V\001\0À|\001\0l£\001\0\030Ê\001\0Äð\001\0p\027\002\0\034>\002\0Èd\002\0t‹\002\0
²\002\0ÌØ\002\0xÿ\002\0$&\003\0ÐL\003\0|s\003'

> untar("J:/GIMMS/NDVI/1981/81aug15a.n07-VIg/81aug15a.n07-VIg_data.tif.gz")
Error in rawToChar(block[seq_len(ns)]) :
  embedded nul in string: 'II*\0Ì <\001´
\0\0`G\0\0\fn\0\0¸”\0\0d»\0\0\020â\0\0¼\b\001\0h/\001\0\024V\001\0À|\001\0l£\001\0\030Ê\001\0Äð\001\0p\027\002\0\034>\002\0Èd\002\0t‹\002\0
²\002\0ÌØ\002\0xÿ\002\0$&\003\0ÐL\003\0|s\003'

> traceback()
3: rawToChar(block[seq_len(ns)])
2: untar2(tarfile, files, list, exdir)
1: untar(files[1])

> sessionInfo()
R version 2.15.2 (2012-10-26)
Platform: x86_64-w64-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United
States.1252    LC_MONETARY=English_United States.1252 LC_NUMERIC=C

[5] LC_TIME=English_United States.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base



_______________________________________

Hakim Abdi
Doctoral Student

Physical Geography and Ecosystem Science
Lund University
Sölvegatan 12, 223 62 Lund, Sweden

Office: +46 (0) 46 2223132
Mobile: +46 (0) 73 9300116

Email: hakim.a...@nateko.lu.se

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