There is the error message:
Error : package ‘lattice’ was built before R 3.0.0: please re-install it
Perhaps the problem lies there.
Clint Bowman INTERNET: cl...@ecy.wa.gov
Air Quality Modeler INTERNET: cl...@math.utah.edu
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On Tue, 21 Jan 2014, John Sorkin wrote:
I am running R under Linux Mint 15 and trying to download and install
nlme. During the download I get an error message:
Warning message:
In install.packages("nlme") :
installation of package ‘nlme’ had non-zero exit status
When I try to load the package, I get an error message
library(nlme)
Error: package ‘nlme’ was built before R 3.0.0: please re-install it
Why am I getting the error message, and what can I do to fix the
problem? Please see output of R session below.
Thank you,
John
version
platform i486-pc-linux-gnu
arch i486
os linux-gnu
system i486, linux-gnu
status
major 3
minor 0.1
year 2013
month 05
day 16
svn rev 62743
language R
version.string R version 3.0.1 (2013-05-16)
nickname Good Sport
install.packages("nlme")
Installing package into ‘/home/john/R/i486-pc-linux-gnu-library/3.0’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
trying URL
'http://watson.nci.nih.gov/cran_mirror/src/contrib/nlme_3.1-113.tar.gz'
Content type 'application/octet-stream' length 752188 bytes (734 Kb)
opened URL
==================================================
downloaded 734 Kb
* installing *source* package ‘nlme’ ...
** package ‘nlme’ successfully unpacked and MD5 sums checked
** libs
gfortran -fpic -O2 -pipe -g -c chol.f -o chol.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden
-fpic -O2 -pipe -g -c corStruct.c -o corStruct.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden
-fpic -O2 -pipe -g -c gnls.c -o gnls.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden
-fpic -O2 -pipe -g -c init.c -o init.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden
-fpic -O2 -pipe -g -c matrix.c -o matrix.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden
-fpic -O2 -pipe -g -c nlOptimizer.c -o nlOptimizer.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden
-fpic -O2 -pipe -g -c nlme.c -o nlme.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden
-fpic -O2 -pipe -g -c nlmefit.c -o nlmefit.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden
-fpic -O2 -pipe -g -c nls.c -o nls.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden
-fpic -O2 -pipe -g -c pdMat.c -o pdMat.o
gfortran -fpic -O2 -pipe -g -c rs.f -o rs.o
gcc -std=gnu99 -shared -o nlme.so chol.o corStruct.o gnls.o init.o
matrix.o nlOptimizer.o nlme.o nlmefit.o nls.o pdMat.o rs.o -lgfortran
-lm -lquadmath -L/usr/lib/R/lib -lR
installing to /home/john/R/i486-pc-linux-gnu-library/3.0/nlme/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error : package ‘lattice’ was built before R 3.0.0: please re-install it
ERROR: lazy loading failed for package ‘nlme’
* removing ‘/home/john/R/i486-pc-linux-gnu-library/3.0/nlme’
The downloaded source packages are in
‘/tmp/Rtmpo7eFZf/downloaded_packages’
Warning message:
In install.packages("nlme") :
installation of package ‘nlme’ had non-zero exit status
library(nlme)
Error: package ‘nlme’ was built before R 3.0.0: please re-install it
John David Sorkin M.D., Ph.D.
Professor of Medicine
Chief, Biostatistics and Informatics
University of Maryland School of Medicine Division of Gerontology and
Geriatric Medicine
Baltimore VA Medical Center
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GRECC (BT/18/GR)
Baltimore, MD 21201-1524
(Phone) 410-605-7119
(Fax) 410-605-7913 (Please call phone number above prior to faxing)
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