Hi everyone, Im having some troubles installing R 3.1.0 on OSX from source using the homebrew package and was wondering if any OSX users had any ideas. I posted an issue on homebrew-science but the maintainer suggested it might be an error upstream, so I am reposting it here. Here is the error, it fails when building the package indices:
*** installing help indices ** building package indices Loading required package: Matrix Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/private/tmp/r-SjCB/R-3.0.3/library/Matrix/libs/Matrix.so': dlopen(/private/tmp/r-SjCB/R-3.0.3/library/Matrix/libs/Matrix.so, 6): Symbol not found: _cholmod_aat Referenced from: /private/tmp/r-SjCB/R-3.0.3/library/Matrix/libs/Matrix.so Expected in: flat namespace in /private/tmp/r-SjCB/R-3.0.3/library/Matrix/libs/Matrix.so Error : require(Matrix) is not TRUE ERROR: installing package indices failed * removing /private/tmp/r-SjCB/R-3.0.3/library/Matrix make[2]: *** [Matrix.ts] Error 1 make[1]: *** [recommended-packages] Error 2 make: *** [stamp-recommended] Error 2 Here is my environment: CPU: 8-core 64-bit ivybridge OS X: 10.9.2-x86_64 Xcode: 5.1.1 Google searching for _cholmod_aat only shows up with the two issues related to this issue. Here is a gist to the entire error log, pinned to the line number where the error appears: https://gist.github.com/anonymous/11002635#file-02-make-L1711 And a link to the discussion thread regarding this error on homebrew-science, it has been persisting since 3.0.2: https://github.com/Homebrew/homebrew-science/issues/740 Thanks! Best, Rory [[alternative HTML version deleted]]
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