Dear Jim,
Thank you for replying to my query. Both the files contains tumor
mutational frequencies. The LG_freq contains the entire mutational
landscape and the HIPS2_freq contains mutational frequency of one clone. I
want to see how both the frequency curve are behaving in one plot. Is that
possible to see in one plot with different colors to distinguish the
frequency distribution of both files in one image where I can see both the
plots. I have tried density plot but could not figure out how to add the
next frequency distribution file to the same plot and see the difference in
both the plots in one image with different colors. Can this be done?
----------------------------------------------------------
Vivek Das
On Tue, Jul 8, 2014 at 12:19 PM, jim holtman <jholt...@gmail.com> wrote:
> Have you tried the density function:
>
> > a <- read.table('/users/jim/downloads/LG_freq.txt',header = TRUE)
> > str(a)
> 'data.frame': 669 obs. of 2 variables:
> $ Position : Factor w/ 669 levels "chr1_103381212",..: 308 463 458 160
> 393 457 165 464 3 467 ...
> $ frequency: num 75 62.5 50 48.9 47.1 ...
> > plot(density(a$frequency))
> >
>
>
>
> Jim Holtman
> Data Munger Guru
>
> What is the problem that you are trying to solve?
> Tell me what you want to do, not how you want to do it.
>
>
> On Tue, Jul 8, 2014 at 4:30 AM, Vivek Das <vd4mm...@gmail.com> wrote:
>
>> Dear Users,
>>
>> I need some assistance in plotting some distribution enrichments, like I
>> have files with some frequency values, now I want to plot plot the
>> distribution of those frequencies for one sample and then on the same plot
>> I want to plot the next samples where the frequency comes from another
>> file. Can you tell me which command to use? I would like to see the
>> distribution both in curve and histrogram format. Even if the frequency
>> are
>> not normally distributed I would like to see to what extent they are
>> distributed and how much they are deviated from the normal distribution.
>> However I would expect a Gaussian curve but due to the low frequency in
>> LG_freq it would be not evident. Can you share some snippets for that? Am
>> attaching the two files, can you please guide me how to do it, I tried
>> with
>> the plot function but I was unable to do, I read somewhere it was possible
>> to do with plot function with type 'L' but am unable to do that. I would
>> need some assistance in this. Thanks
>>
>>
>>
>> ----------------------------------------------------------
>>
>> Das
>>
>> ______________________________________________
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>> PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>>
>>
>
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