Dear All
I'm using PVClust to perform hierarchical clustering, for the output plot I can
control most of the graphical I need, however the plot is large and I would
like to split it vertically into two panels one above the other. Is there a way
to plot only part of a PVClust plot, I tried to convert it to a dendrogram with
result2 = as.dendrogram(result)
however I get the error message "no applicable method for 'as.dendrogram'
applied to an object of class "pvclust". I also wondered whether it would be
possible to convert to a phylogenetic tree and use the functions in the 'ape'
package?
Any suggestion on how to split up a PVclust plot would be greatly appreciated
(code for the plot below)
Thanks
Tom
result <- pvclust(df.1, method.dist="uncentered",
method.hclust="average",nboot=10)
par(mar=c(0,0,0,0))
par(oma=c(0,0,0,0))
plot(result, print.pv =FALSE, col.pv=c("red","",""), print.num=FALSE, float =
0.02, font=1,
axes=T, cex =0.85, main="", sub="", xlab="", ylab= "", labels=NULL,
hang=-1)
pvrect(result, alpha=0.95)
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
