On Feb 4, 2015, at 11:42 AM, Nick Jeffery wrote: > Dear R users, > > I am having trouble finding a package and function to remove DNA sequences > from a fasta file that are >99% similar and/or create an output of the > remaining "unique" sequences. I found the uniquefasta function in phytools > but R can't find this function and also doesn't allow me to set the 99% > parameter. This is because I'm building a phylogeny with tons of nearly > identical sequences so I want to reduce the number of individuals. >
R can't find this function ???? I'm guessing this could be a case of FAQ 7.30: http://127.0.0.1:11553/doc/manual/R-FAQ.html#I-installed-a-package-but-the-functions-are-not-there > > Thanks for any help and suggestions, > Nick > > -- > Nick Jeffery, PhD Candidate > Integrative Biology > SCIE 1453 > University of Guelph > Guelph, Ontario, Canada > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. David Winsemius Alameda, CA, USA ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.