I was hoping someone may be able to help with the following. I fit the model below using the pscl package. I am modelling catch data (about 17,000 entry points) so lots of zero's
fit.hurdle.bin = hurdle(Catch ~ Beach + Region + Year+ Decade + Month + Season + Whale+ Sex + Size+ meantemp + meanviz + offset(log(Length.nets..km.)), dist="poisson",zero.dist="binomial",link="logit",trace=T) The model output tells me that: Warning message: In sqrt(diag(object$vcov)) : NaNs produced (against year) I then use hurdle control with "L-BFGS-B" to set some parameter controls to solve this issue, but get the warning message: L-BFGS-B needs finite values of 'fn' In addition: Warning message: In optim(fn = countDist, gr = countGrad, par = c(start$count, if (dist == : method L-BFGS-B uses 'factr' (and 'pgtol') instead of 'reltol' and 'abstol' How do I write the script for Hurdle control to solve these issues? Any help would be really appreciated All the best Matt Dr. Matt Dicken Senior Scientist Telephone: 0315660400 | Fax: 0315660493 | Email: m...@shark.co.za Physical Address: 1a Herrwood Drive, Umhlanga Rocks, 4320 | www.shark.co.za [http://www.shark.co.za/ImageHandler.ashx?fguid=2c107195-209c-4fb2-aae5-31e45ce5de1a] Connect with us on social media: [KZNSB Facebook] <https://www.facebook.com/kznsb> [KZNSB Twitter] <https://twitter.com/KznSharks?lang=en> [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.