Hi
Do not use attachment, copy result of dput(object) to your mail instead. This
enables us to see how your data really look like.
I get different error.
> widesII(used, available, avknown = TRUE, alpha = 0.05)
Error in widesII(used, available, avknown = TRUE, alpha = 0.05) :
used and available matrices should have the same number of habitats
The error is due to fact that row names were read as column of data frame.
After correcting this I got the same error as you.
> widesII(used, available, avknown = TRUE, alpha = 0.05)
Error in as.vector(X) %*% t(as.vector(Y)) : non-conformable arguments
I checked the help page and I noticed that
a
for widesI and widesII, a vector with named elements describing the sample or
the proportion of available resource units. For widesIII a matrix or a data
frame giving the number or the proportion of available resource units for each
animal (in rows) in each resource category (in columns)
but your "available" is a data frame.
When I change it to named vector (as required)
> dput(avail)
structure(c(0.06, 0.13, 0.16, 0.15, 0.06, 0.17, 0.12, 0.04, 0.09,
0.02), .Names = c("Riparian", "Conifer", "MtShrub1", "Aspen",
"RockOutcrop", "Bitterbrush", "Windblown", "MtShrub2", "PresBurn",
"Clearcut"))
widesII came with result without complain.
> widesII(used, avail, avknown = TRUE, alpha = 0.05)
************** Manly's Selection ratios for design II ********
1. Test of identical use of habitat by all animals
(Classical Khi-2 performed on the used matrix):
Khi2L1 df pvalue
So the lesson is:
1. Read the help page.
2. Look to your data by ?str
3. When your data are as expected by the function, check if there is no syntax
problem.
4. Try to simplify the example and send it to help list preferably by ?dput.
Cheers
Petr
> -----Original Message-----
> From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of
> Alexander Moßbrucker
> Sent: Monday, September 21, 2015 8:58 AM
> To: r-help@r-project.org; jdnew...@dcn.davis.ca.us
> Subject: Re: [R] ERROR - non-conformable arguments
>
> Hi all,
>
> I am sorry I forgot to attach the excel file and txt files with the
> test data I used for this example.....
>
> I am almost sure the problem was caused by the way R is reading this
> data,
>
> Hope to get some help, best, Alex
>
> 2015-09-20 14:03 GMT+07:00 Alexander Moßbrucker
> <islandelepha...@gmail.com>:
>
> >
> > Hi,
> >
> > I am using adehabitatHS for habitat selection analysis using
> > widesII(), when running the script I get the error message: Error in
> > as.vector(X) %*%
> > t(as.vector(Y)) : non-conformable arguments
> >
> > Here the script I am using including the data
> >
> > > #dataset (read from tab deliminated text file)
> > >
> > > available
> > Riparian Conifer MtShrub1 Aspen RockOutcrop Bitterbrush Windblown
> > MtShrub2
> > PresBurn
> > 1 0.06 0.13 0.16 0.15 0.06 0.17 0.12
> > 0.04
> > 0.09
> > Clearcut
> > 1 0.02
> > > used
> > Riparian Conifer MtShrub1 Aspen RockOutcrop Bitterbrush
> Windblown
> > MtShrub2 PresBurn
> > Ani1 0 0 0 2 0 16
> 5
> > 14 28
> > Ani2 0 2 1 2 2 5
> 10
> > 10 35
> > Ani3 0 1 2 1 0 14
> 9
> > 8 40
> > Ani4 0 1 3 7 5 3
> 6
> > 9 31
> > Ani5 0 0 2 2 5 18
> 10
> > 6 25
> > Ani6 0 2 1 4 2 7
> 6
> > 15 19
> > Clearcut
> > Ani1 8
> > Ani2 9
> > Ani3 4
> > Ani4 9
> > Ani5 0
> > Ani6 19
> > >
> > > #analysis
> > >
> > > widesII(used, available, avknown = TRUE, alpha = 0.05)
> > Error in as.vector(X) %*% t(as.vector(Y)) : non-conformable arguments
> >
> > Note: I am using an example dataset to test out a script I want to
> use
> > to analyse my own dataset, for this I exported the example dataset to
> > excel, converted it to tab deliminated text file, then imported it.
> >
> > All worked well when using the example dataset provided by
> > adehabitatHS, thus I suspect that somhow my test dataset is not
> > correctly read in or something similar.
> >
> > I am quite new to R, thus apologize for any shortcomings in reporting
> etc..
> >
> > Many thanks, best, Alex
> >
> >
> >
> > --
> > View this message in context:
> > http://r.789695.n4.nabble.com/ERROR-non-conformable-arguments-
> tp471251
> > 6.html Sent from the R help mailing list archive at Nabble.com.
> >
> >
> >
> >
________________________________
Tento e-mail a jakékoliv k němu připojené dokumenty jsou důvěrné a jsou určeny
pouze jeho adresátům.
Jestliže jste obdržel(a) tento e-mail omylem, informujte laskavě neprodleně
jeho odesílatele. Obsah tohoto emailu i s přílohami a jeho kopie vymažte ze
svého systému.
Nejste-li zamýšleným adresátem tohoto emailu, nejste oprávněni tento email
jakkoliv užívat, rozšiřovat, kopírovat či zveřejňovat.
Odesílatel e-mailu neodpovídá za eventuální škodu způsobenou modifikacemi či
zpožděním přenosu e-mailu.
V případě, že je tento e-mail součástí obchodního jednání:
- vyhrazuje si odesílatel právo ukončit kdykoliv jednání o uzavření smlouvy, a
to z jakéhokoliv důvodu i bez uvedení důvodu.
- a obsahuje-li nabídku, je adresát oprávněn nabídku bezodkladně přijmout;
Odesílatel tohoto e-mailu (nabídky) vylučuje přijetí nabídky ze strany příjemce
s dodatkem či odchylkou.
- trvá odesílatel na tom, že příslušná smlouva je uzavřena teprve výslovným
dosažením shody na všech jejích náležitostech.
- odesílatel tohoto emailu informuje, že není oprávněn uzavírat za společnost
žádné smlouvy s výjimkou případů, kdy k tomu byl písemně zmocněn nebo písemně
pověřen a takové pověření nebo plná moc byly adresátovi tohoto emailu případně
osobě, kterou adresát zastupuje, předloženy nebo jejich existence je adresátovi
či osobě jím zastoupené známá.
This e-mail and any documents attached to it may be confidential and are
intended only for its intended recipients.
If you received this e-mail by mistake, please immediately inform its sender.
Delete the contents of this e-mail with all attachments and its copies from
your system.
If you are not the intended recipient of this e-mail, you are not authorized to
use, disseminate, copy or disclose this e-mail in any manner.
The sender of this e-mail shall not be liable for any possible damage caused by
modifications of the e-mail or by delay with transfer of the email.
In case that this e-mail forms part of business dealings:
- the sender reserves the right to end negotiations about entering into a
contract in any time, for any reason, and without stating any reasoning.
- if the e-mail contains an offer, the recipient is entitled to immediately
accept such offer; The sender of this e-mail (offer) excludes any acceptance of
the offer on the part of the recipient containing any amendment or variation.
- the sender insists on that the respective contract is concluded only upon an
express mutual agreement on all its aspects.
- the sender of this e-mail informs that he/she is not authorized to enter into
any contracts on behalf of the company except for cases in which he/she is
expressly authorized to do so in writing, and such authorization or power of
attorney is submitted to the recipient or the person represented by the
recipient, or the existence of such authorization is known to the recipient of
the person represented by the recipient.
______________________________________________
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
