Hi all, I am looking for an R package that calculates a pair wise LD (linkage disequilibrium) I came up with library(LDheatmap). has any one used this library? I would appreciate if I get a help how to use this library for my set of data..
My data set look like Geno file Name1 1 1 2 2 2 2 Name2 2 2 2 2 2 2 Name3 2 2 2 2 2 2 Name4 2 2 2 2 2 2 Name5 1 1 2 2 2 2 NameN 1 1 1 2 2 2 2 The other file is map file Chromosome, SNP, Location (physical) Thank you in advance ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
