Perhaps the C function Rf_logspace_sum(double *x, int n) would help in computing log(b). It computes log(sum(exp(x_i))) for i in 1..n, avoiding unnecessary under- and overflow.
Bill Dunlap TIBCO Software wdunlap tibco.com On Sun, Nov 6, 2016 at 5:25 PM, Rolf Turner <r.tur...@auckland.ac.nz> wrote: > On 07/11/16 13:07, William Dunlap wrote: > >> Have you tried reparameterizing, using logb (=log(b)) instead of b? >> > > Uh, no. I don't think that that makes any sense in my context. > > The "b" values are probabilities and must satisfy a "sum-to-1" > constraint. To accommodate this constraint I re-parametrise via a > "logistic" style parametrisation --- basically > > b_i = exp(z_i)/[sum_j exp(z_j)], j = 1, ... n > > with the parameters that the optimiser works with being z_1, ..., z_{n-1} > (and with z_n == 0 for identifiability). The objective function is of the > form sum_i(a_i * log(b_i)), so I transform back > from the z_i to the b_i in order calculate the value of the objective > function. But when the z_i get moderately large-negative, the b_i become > numerically 0 and then log(b_i) becomes -Inf. And the optimiser falls over. > > cheers, > > Rolf > > >> Bill Dunlap >> TIBCO Software >> wdunlap tibco.com <http://tibco.com> >> >> On Sun, Nov 6, 2016 at 1:17 PM, Rolf Turner <r.tur...@auckland.ac.nz >> <mailto:r.tur...@auckland.ac.nz>> wrote: >> >> >> I am trying to deal with a maximisation problem in which it is >> possible for the objective function to (quite legitimately) return >> the value -Inf, which causes the numerical optimisers that I have >> tried to fall over. >> >> The -Inf values arise from expressions of the form "a * log(b)", >> with b = 0. Under the *starting* values of the parameters, a must >> equal equal 0 whenever b = 0, so we can legitimately say that a * >> log(b) = 0 in these circumstances. However as the maximisation >> algorithm searches over parameters it is possible for b to take the >> value 0 for values of >> a that are strictly positive. (The values of "a" do not change during >> this search, although they *do* change between "successive searches".) >> >> Clearly if one is *maximising* the objective then -Inf is not a value >> of >> particular interest, and we should be able to "move away". But the >> optimising function just stops. >> >> It is also clear that "moving away" is not a simple task; you can't >> estimate a gradient or Hessian at a point where the function value >> is -Inf. >> >> Can anyone suggest a way out of this dilemma, perhaps an optimiser >> that is equipped to cope with -Inf values in some sneaky way? >> >> Various ad hoc kludges spring to mind, but they all seem to be >> fraught with peril. >> >> I have tried changing the value returned by the objective function >> from >> "v" to exp(v) --- which maps -Inf to 0, which is nice and finite. >> However this seemed to flatten out the objective surface too much, >> and the search stalled at the 0 value, which is the antithesis of >> optimal. >> >> The problem arises in a context of applying the EM algorithm where >> the M-step cannot be carried out explicitly, whence numerical >> optimisation. >> I can give more detail if anyone thinks that it could be relevant. >> >> I would appreciate advice from younger and wiser heads! :-) >> >> cheers, >> >> Rolf Turner >> >> -- >> Technical Editor ANZJS >> Department of Statistics >> University of Auckland >> Phone: +64-9-373-7599 ext. 88276 <tel:%2B64-9-373-7599%20ext.%2 >> 088276> >> >> ______________________________________________ >> R-help@r-project.org <mailto:R-help@r-project.org> mailing list -- >> To UNSUBSCRIBE and more, see >> https://stat.ethz.ch/mailman/listinfo/r-help >> <https://stat.ethz.ch/mailman/listinfo/r-help> >> PLEASE do read the posting guide >> http://www.R-project.org/posting-guide.html >> <http://www.R-project.org/posting-guide.html> >> and provide commented, minimal, self-contained, reproducible code. >> >> >> > > -- > Technical Editor ANZJS > Department of Statistics > University of Auckland > Phone: +64-9-373-7599 ext. 88276 > [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.