Maybe the Bioconductor package "intansv" can help you. You asked for linear chromosomes, but such data is commonly plotted in Circos plots as e.g. with the Bioconductor OmicsCircos package (cf. https://bioconductor.org/packages/devel/bioc/vignettes/OmicCircos/inst/doc/OmicCircos_vignette.pdf)
However the Bioconductor Project has its own support mailing list, R-Help is for programming help. B. > On 2018-07-28, at 02:24, Bogdan Tanasa <tan...@gmail.com> wrote: > > Dear all, > > we wish you a fruitful and refreshing weekend ! Thought that I may also > write to ask you for a suggestion, specifically if you could please advise > on whether there is any package already built (in R) that could help with > the following data visualization : > > > we have a set of mutations from many cancer samples > > we would like to display the POINT MUTATIONS along the chromosome > coordinates (on the linear scale, ie. HORIZONTALLY) > > we would like to display the TRANSLOCATIONS (and GENE FUSIONS), as > VERTICAL LINES connecting the breakpoints that are located on the > chromosomes that are represented HORIZONTALLY > > Thanks a lot, > > -- bogdan > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
