Looks like you do not have permissions to write to that directory, but
it's not clear that this is a major problem. The updating of boot and
foreign is not something that regular non BioC users would have usually
needed. Did you recently update your R installation? Library locations
sometimes get changed when you do that. If so, what happens when you
execute:
update.packages(checkBuilt=TRUE)
--
David.
On 8/17/19 7:56 AM, Tewelde Tesfaye wrote:
Dear Sir/Madam
Greetings
Error message [
install.packages("BiocManager")
Installing package into
‘C:/Users/default.DESKTOP-DE6RR7L/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
trying URL '
https://cloud.r-project.org/bin/windows/contrib/3.6/BiocManager_1.30.4.zip'
Content type 'application/zip' length 292998 bytes (286 KB)
downloaded 286 KB
package ‘BiocManager’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\default.DESKTOP-DE6RR7L\AppData\Local\Temp\RtmpKSLUUH\downloaded_packages
BiocManager::install("GenomicRanges")
Bioconductor version 3.9 (BiocManager 1.30.4), R 3.6.1 (2019-07-05)
Installing package(s) 'GenomicRanges'
trying URL '
https://bioconductor.org/packages/3.9/bioc/bin/windows/contrib/3.6/GenomicRanges_1.36.0.zip
'
Content type 'application/zip' length 2135144 bytes (2.0 MB)
downloaded 2.0 MB
package ‘GenomicRanges’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\default.DESKTOP-DE6RR7L\AppData\Local\Temp\RtmpKSLUUH\downloaded_packages
installation path not writeable, unable to update packages: boot, foreign,
nlme ]
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
