Hello, I was running this software https://github.com/eleporcu/TWMR via:
Rscript MR.R ENSG00000154803 my files are located here: https://filebin.net/smt1kcw2d9sody67 I got this error: [1] "ENSG00000154803" Error in solve.default(C) : Lapack routine dgesv: system is exactly singular: U[15,15] = 0 Calls: solve -> solve.default Execution halted in the original code I changed this: and I also in order to run it I changed the beginning of the code to be: cmd_args <- commandArgs(TRUE)if (length(cmd_args) == 0L) stop("No arguments specified.") print(cmd_args) gene<-cmd_args[length(cmd_args)] ## Last argument is the 'gene' Ngwas<-239087 N_eQTLs<-32000 out<-c("gene","alpha","SE","P","Nsnps","Ngene") file<-paste(gene,"matrix",sep=".")if (!file.exists(file)) stop("File not found: ", file) filecluster<-read.table(file,header=T,sep=" ",dec=".") beta<-as.matrix(filecluster[,2:(length(filecluster[1,])-1)]) when I was running it with just 3 columns in .matrix file. Please advise, is it something wrong with the format of my files now? Thanks Ana [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
