Please supply sample data in dput() format See ?dput. You might find these links helpful.
http://adv-r.had.co.nz/Reproducibility.html http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example On Tue, 11 Feb 2020 at 15:07, Ana Marija <sokovic.anamar...@gmail.com> wrote: > so I transformed my data from the previous email to look like this: > > > head(tot) > dat type > 1 -3.962 inter.individual.variance > 2 -4.301 inter.individual.variance > 3 -1.690 inter.individual.variance > 4 -0.375 inter.individual.variance > 5 1.816 inter.individual.variance > 6 0.138 inter.individual.variance > > tail(tot) > dat type > 31177 -4.09 intra.individual.variance > 31178 -4.64 intra.individual.variance > 31179 -5.57 intra.individual.variance > 31180 -2.96 intra.individual.variance > 31181 -4.43 intra.individual.variance > 31182 -3.60 intra.individual.variance > > then I can make plot using this: > > densityplot(~dat,data=tot, > groups=type, > par.settings = list(superpose.line = list(col = c("blue","red"))), > xlab="log2 (variance)", > plot.points=FALSE, > auto.key=TRUE) > > and calculate my p value with t test, say it is 0.005 > > But how to add that p value in between distribution of the curves? > > Thanks > Ana > > On Tue, Feb 11, 2020 at 12:54 PM Ana Marija <sokovic.anamar...@gmail.com> > wrote: > > > > Hi, > > > > I have data like this: > > > > > head(a) > > X geneID inter.individual.variance > > intra.individual.variance F.value p.value CV > > 1 3iUZ.47hLFki49VR4o MLLT10 0.0642 > > 0.01395 4.60 1.00e-05 0.0222 > > 2 fEn1QlU0MCVe9GeR64 C1orf123 0.0507 > > 0.00671 7.57 1.00e-08 0.0172 > > 3 ud_tTlU5LtB478JxIk FSD1L 0.3100 > > 0.02682 11.56 1.00e-11 0.0639 > > 4 3KV3OJIIRuJ5KJ6VkI TXNDC11 0.7710 > > 0.02813 27.41 9.99e-19 0.0688 > > 5 o_rupcEAKnQqnoh6ec CYB5R2 3.5209 > > 0.03391 103.83 9.99e-31 0.1357 > > 6 Nk_t6ULcQ7VDNChBRU GBP1 1.1005 > > 0.09522 11.56 9.98e-12 0.0773 > > > > I would like to create density plot, like the attached between > > "inter.individual.variance" and "intra.individual.variance" and have p > > value between those two curves. > > > > Please advise, > > Ana > > ______________________________________________ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > -- John Kane Kingston ON Canada [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.